View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_6 (Length: 431)
Name: NF17442_low_6
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 17944783 - 17944542
Alignment:
| Q |
16 |
aatatattgaagtaagttcttgtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagnnnnnnntattgattacaatgaggtaa |
115 |
Q |
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| T |
17944783 |
aatatattgaagtaagttctagtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagaaaaaaatattgattacaatgaggtaa |
17944684 |
T |
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| Q |
116 |
actcatcaacgattctttgtttggagattaatttacgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagtccgaggatcgtcgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17944683 |
actcatcaacgattctttgtttggagattaatttacgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagcccgaggatcgtcgca |
17944584 |
T |
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| Q |
216 |
ttaagactcttacaaaccactatttgaccgctagacatgctt |
257 |
Q |
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| T |
17944583 |
ttaagactcttacaaaccactatttgaccactagacatgctt |
17944542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 19416590 - 19416334
Alignment:
| Q |
16 |
aatatattgaagtaagttcttgtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagnnnnnnntattgattacaatgaggtaa |
115 |
Q |
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| T |
19416590 |
aatatattgaagtaagttctagtttatttctctgtgttttaccaaagaaaactcatcagctcatatcattaagaaaaaa-tattgattacaatgaggtaa |
19416492 |
T |
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| Q |
116 |
actcatcaacgattctttgtttggagattaatttacgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagtccgaggatcgtcgca |
215 |
Q |
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| T |
19416491 |
actcatcaaccattctttgtttggagattaatttatgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagtccgaggatcgtcgca |
19416392 |
T |
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| Q |
216 |
ttaagactcttacaaaccactatttgaccgctagacatgc--ttgtggatgtctcatt |
271 |
Q |
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| T |
19416391 |
ttaagactcttacaaaccactatttgaccgctaaacatgcttttgtggatgtcccatt |
19416334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 280 - 413
Target Start/End: Complemental strand, 19416265 - 19416132
Alignment:
| Q |
280 |
tcatttgtataattctcattgtttctaatacaacattttcttaagcttttatctctttcttctctgatatcatgattctcaatagaatgtgtttgcaaat |
379 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19416265 |
tcatttgtaccattctcatagtttctaatacaacattttcttaagcttttatctctttcttctctgatatcatgattctcaatagaatgtgtttgcaaat |
19416166 |
T |
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| Q |
380 |
attacaatttgtgaagtaaaagtggccatagttg |
413 |
Q |
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| T |
19416165 |
attacaatttgtgaagtaaaagtgaccatagttg |
19416132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 291 - 413
Target Start/End: Complemental strand, 17944439 - 17944316
Alignment:
| Q |
291 |
attctcattgtttctaatacaacattttcttaagcttttatctctttcttctctgatatcat-gattctcaatagaatgtgtttgcaaatattacaattt |
389 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
17944439 |
attctcttagtttctaatacaacattttcttaagcttttatctctttcttctctgatatcattgattctcaatagaatgtgttttcaaatattacaattt |
17944340 |
T |
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| Q |
390 |
gtgaagtaaaagtggccatagttg |
413 |
Q |
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||||| |||||||||||||||||| |
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| T |
17944339 |
gtgaaataaaagtggccatagttg |
17944316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 19403384 - 19403289
Alignment:
| Q |
18 |
tatattgaagtaagttcttgtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagnnnnnnntattgattacaatgaggtaaa |
116 |
Q |
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||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19403384 |
tatattgaatcaagttctagtttatttct--gtgttttaccaaagaaaactcatcagctcgtatcattaag-aaaaaatattgattacaatgaggtaaa |
19403289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 15232459 - 15232522
Alignment:
| Q |
288 |
ataattctcattgtttctaatacaacattttcttaagcttttatctctttcttctctgatatcat |
352 |
Q |
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|||||||||| |||||| |||| ||||||| ||||||||||||||||||| | || ||||||||| |
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| T |
15232459 |
ataattctcaatgtttccaataaaacattt-cttaagcttttatctctttttcctttgatatcat |
15232522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 36824500 - 36824461
Alignment:
| Q |
291 |
attctcattgtttctaatacaacattttcttaagcttttat |
331 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||| |
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| T |
36824500 |
attctcattgtttccaatacaaca-tttcttaagcttttat |
36824461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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