View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_7 (Length: 392)
Name: NF17442_low_7
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 54339457 - 54339827
Alignment:
| Q |
1 |
aggacctttccatgcttagcagatcggcatggttgaaaacatcaaaactattttatataaattctatgttattgagtttcatactcattatgtttggggg |
100 |
Q |
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| T |
54339457 |
aggacctttccatgcttagcacatcggcatggttgaaaacatcaaaactattttatataaattctatgttattgagtttcatactcattatgtttggggg |
54339556 |
T |
|
| Q |
101 |
atattttcaagtatcaaatacacattaaaagattgaggagtacaaaaataattcgtcggacgttcaatgttttaaatcgaaaccagatcagtcagtctaa |
200 |
Q |
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| T |
54339557 |
atattttcaagtatc-aatacacattaaaagattgaggagtacaaaaataattcgtcagacgttcaatgttttaagtcgaaaccaga----tcagtctaa |
54339651 |
T |
|
| Q |
201 |
agttttatgaaaatgtggttttatgtttgtaaattc-atg-nnnnnnngttgttttaaagttcatttcaaggttgtgaaactacattcttttaagtttta |
298 |
Q |
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| T |
54339652 |
agttttatgaaaatgtggttttatgtttgtaaattcaatgttttttttgttgttgtaaagttcatttcaaggttgtaaaactacattcttttaattttta |
54339751 |
T |
|
| Q |
299 |
ctacagattccaatttatttttatttcctgcgccccctttaaagttatttccttaaaattaaaatttaatagcata |
374 |
Q |
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| T |
54339752 |
ctacagattccaatttatttttatttcctgcgcaccctttaaagttatttccttaaaattaaaatttaatagcata |
54339827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 1420428 - 1420534
Alignment:
| Q |
194 |
agtctaaagttttatgaaaatgtggttttatgtttgtaaattc-atg-nnnnnnngttgttttaaagttcatttcaaggttgtgaaactacattctttta |
291 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||| || |
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| T |
1420428 |
agtctaaagttttatgaaaatgtggtcttatgtttgtaaattcaatgttttttttgttgttgtaaagttcatttcaaggttgtaaaactacattcttata |
1420527 |
T |
|
| Q |
292 |
agtttta |
298 |
Q |
| |
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| ||||| |
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| T |
1420528 |
aatttta |
1420534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 32862040 - 32861921
Alignment:
| Q |
28 |
catggttgaaaacatcaaaactattttatataaattctatgttattgagtttcatactcattatgtttgggg-gatattttcaagtatcaaatacacatt |
126 |
Q |
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||||| ||||||||| ||||| |||||||||||||||||| ||||||||||| ||| ||| ||| ||||||| ||| |||||| |||| | |||||||| |
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| T |
32862040 |
catggctgaaaacattaaaacaattttatataaattctatattattgagttttatattcactatctttggggagatgttttcaggtat-tagtacacatt |
32861942 |
T |
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| Q |
127 |
aaaagattgaggagtacaaaa |
147 |
Q |
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||||||||| ||||| |||| |
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| T |
32861941 |
gaaagattgatgagtaaaaaa |
32861921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 39696021 - 39696081
Alignment:
| Q |
10 |
ccatgcttagcagatcggcatggttgaaaacatcaaaactattttatataaattctatgtt |
70 |
Q |
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|||||||||||| | | |||||| | |||||||||||| |||| |||||||||||||||| |
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| T |
39696021 |
ccatgcttagcacacctgcatggctaaaaacatcaaaatgatttcatataaattctatgtt |
39696081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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