View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17442_low_9 (Length: 384)
Name: NF17442_low_9
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_9 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 25 - 384
Target Start/End: Complemental strand, 4246644 - 4246301
Alignment:
| Q |
25 |
tttttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttgtaac |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
4246644 |
tttttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactctgtgtaactgactccaatatagcctatgtaac |
4246545 |
T |
|
| Q |
125 |
cttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtt |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
4246544 |
cttcaagtcatcaaaatcatcagagacacaaacccatgcttgaacatcaaatttctgctgtatactg-catgattgtatacagattgggctaaagtgatt |
4246446 |
T |
|
| Q |
225 |
tttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4246445 |
tttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtc---------------tatggcaattttgt |
4246361 |
T |
|
| Q |
325 |
ctcgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctcc |
384 |
Q |
| |
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|| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
4246360 |
cttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctcc |
4246301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 27 - 384
Target Start/End: Original strand, 4314725 - 4315082
Alignment:
| Q |
27 |
tttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttgtaacct |
126 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||||| | |||||||| | ||| | ||| | |||| || ||||| || ||||||||||||| |
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| T |
4314725 |
tttccagccagtttttccttcaaatctagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgcctttgtaacct |
4314824 |
T |
|
| Q |
127 |
tcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttt |
226 |
Q |
| |
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| | |||| |||| |||||| | ||| |||||||||||||||||||||| |||| |||| || |||| ||||| ||||||||||||||||| ||||| |
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| T |
4314825 |
tgagttcattgaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttt |
4314924 |
T |
|
| Q |
227 |
tcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtct |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
4314925 |
tcccacaccacccatgccaactatggggatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtct |
4315024 |
T |
|
| Q |
327 |
cgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctcc |
384 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
4315025 |
tgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctcc |
4315082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 35 - 384
Target Start/End: Original strand, 4305871 - 4306220
Alignment:
| Q |
35 |
cagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttgtaaccttcaagtca |
134 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| | |||||||| ||||||| ||| | ||||||| ||||| || ||||||||||| || || ||| |
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| T |
4305871 |
cagtttttccttcaaatctagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcctttgtaactttgaattca |
4305970 |
T |
|
| Q |
135 |
tcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacac |
234 |
Q |
| |
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|| |||| || || | |||| |||||||||| |||||||| || |||| |||| || ||| ||||| ||| |||||||||| || |||||||||| | |
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| T |
4305971 |
tcgaaatggtcggaaacacaagcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaatatgatttttcccaccc |
4306070 |
T |
|
| Q |
235 |
cacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccct |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| ||||||| |
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| T |
4306071 |
cacccatgccaactatggggatcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgagaatgaccattttgtcttgatccct |
4306170 |
T |
|
| Q |
335 |
accaaataagttagattcgctgacatctagagaggtggatggagttctcc |
384 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
4306171 |
accaaataagttagattcaccggcatctagagaggtggatggagttctcc |
4306220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 350
Target Start/End: Complemental strand, 4253762 - 4253446
Alignment:
| Q |
25 |
tttttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttgtaac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| ||| | |||||| |||||| | ||| |||||| ||||||||||| ||||||||||| |
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|
| T |
4253762 |
tttttccagtcagtttttccttcaaatcacgatgaagcaactcgttgctgtttatgctacaagcattccctgtaacagactccaatatggcctttgtaac |
4253663 |
T |
|
| Q |
125 |
cttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtt |
224 |
Q |
| |
|
|| || ||||| |||| ||| ||| |||| ||||||||||||||||||| ||||||| ||||||| |||| ||||| ||||||||||||||| | ||| |
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| T |
4253662 |
attaaattcatcgaaatgatccgaggcacaagcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaaaattgtt |
4253563 |
T |
|
| Q |
225 |
tttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgt |
324 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| || || || |||||| ||||||| ||| ||||||||||| |||||| |
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|
| T |
4253562 |
tttcccacaccacccataccaactatggggatcac------gcaagtctta-cagca--atcatcatcatctaacagtaatttgagtatggcctttttgt |
4253472 |
T |
|
| Q |
325 |
ctcgatccctaccaaataagttagat |
350 |
Q |
| |
|
|| |||||||||||||| ||||||| |
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|
| T |
4253471 |
ctgcatccctaccaaatatgttagat |
4253446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 35 - 384
Target Start/End: Complemental strand, 41933196 - 41932847
Alignment:
| Q |
35 |
cagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttgtaaccttcaagtca |
134 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| | |||||||| ||||||| ||| | ||||||| ||||| || |||||||||||||| || ||| |
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|
| T |
41933196 |
cagtttttccttcaaatctagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcctttgtaaccttgaattca |
41933097 |
T |
|
| Q |
135 |
tcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacac |
234 |
Q |
| |
|
|| |||| ||||| | |||| ||||||||||||||||||| || |||| |||| || |||| ||||| ||||||||||||||||||||||||||||| | |
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|
| T |
41933096 |
tcgaaatggtcagaaacacaagcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaaagtggtttttcccaccc |
41932997 |
T |
|
| Q |
235 |
cacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccct |
334 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||| ||| || |
|
|
| T |
41932996 |
cacccatgccaactatggggatcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggcttctttgtctttatctct |
41932897 |
T |
|
| Q |
335 |
accaaataagttagattcgctgacatctagagaggtggatggagttctcc |
384 |
Q |
| |
|
||||||| | ||||||||| |||| |||||||| ||||| ||||||| |
|
|
| T |
41932896 |
tccaaatatgctagattcgccagcatcaagagaggttgatggggttctcc |
41932847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 384
Target Start/End: Original strand, 34802891 - 34803114
Alignment:
| Q |
152 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
251 |
Q |
| |
|
||||||||||||||||||| | ||||||| || ||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||| ||||||| |
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|
| T |
34802891 |
acaaacccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattccacccatgctaactatg |
34802990 |
T |
|
| Q |
252 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagatt |
351 |
Q |
| |
|
|||||| | |||||||||||||| | ||| | |||| ||||||| ||| |||||||| || ||||||| |||||| ||||||| |||| || |
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|
| T |
34802991 |
gggatctc------acaagtcttatcattatcatcaccatcatctaacagtaatttgagtatcgcctctttgtctttatccctgccaaatatgttacat- |
34803083 |
T |
|
| Q |
352 |
cgctgacatctagagaggtggatggagttctcc |
384 |
Q |
| |
|
| | ||||||||||||| ||||||||||||| |
|
|
| T |
34803084 |
--ccggcatctagagaggtagatggagttctcc |
34803114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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