View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17443_high_1 (Length: 655)
Name: NF17443_high_1
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17443_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 54302931 - 54302297
Alignment:
| Q |
1 |
tgattgtcatgtataaagtggcgaacggtgctccatatatacaggtttatcnnnnnnnattctgaaatcaccctttacttttttcaaaatgtcaagctct |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54302931 |
tgattgtcatatataaagtggcgaacgatgctccatatatacaggtttatctttttttattctgaaatcaccctttacttttttcagaatgtcaagctct |
54302832 |
T |
|
| Q |
101 |
aaagttgccatcgtgttaactctttctttacattgaaattgtctgcagattagagaatttgttgcagatcatttggctttaagaggtattgaagtctata |
200 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
54302831 |
aaagttgccatagtgttagctctttctttacattcaaattgtctgcagattagagaatttgttgcggatcatttggctttaagaggtattgaagtccata |
54302732 |
T |
|
| Q |
201 |
ttatcactacggcagctgattgtttttggagtgcatcaaatgatgaagacatttctgaactcaaatcaatttgaaaattggaaataatttattttctttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54302731 |
ttatcactacggcagctgattgtttttggagtgcatcaaatgatgaagacatttcttaactcaaatcaatttgaaaattggaaataatttattttctttg |
54302632 |
T |
|
| Q |
301 |
acagatggatcgattgatgaatttttggccataagaattgtgtacactctaccttatatatatggattagtggtttgaaaaattaggagggataatgttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54302631 |
acagatggatcgattgatgaatttttggccataagaattgtgtacactctaccttatatatatggattagtggtttgaaaaattaggagggataatgttt |
54302532 |
T |
|
| Q |
401 |
tattatctaaattgtatatagttcactgtccaaaaattttgccaggaattcaattatacataaacaataaaattcaaagtccaaatgctcattatgagtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54302531 |
tattatctaaattgtatatagttcactgtccaaattttttgccaggaattcaattatacataaacaataaaattcaaagtccaaatgctcattatgagtt |
54302432 |
T |
|
| Q |
501 |
atgagctagttaatcatttgtacagctctctttcaatcccatttatatatatctcttcctttttgtggtattgtataaattgtgaatattatttacaact |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54302431 |
atgaactagttaatcatttgtacagctctctttcagtcccatttgtatatatttcttcctttttatggtattgtataaattgtgaatattatttacaact |
54302332 |
T |
|
| Q |
601 |
t--ttttcatttggacttctgcttttcatctcttt |
633 |
Q |
| |
|
| |||| |||||||||| || | ||||||||||| |
|
|
| T |
54302331 |
ttttttttatttggacttttggtgttcatctcttt |
54302297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 446 - 633
Target Start/End: Complemental strand, 54307890 - 54307701
Alignment:
| Q |
446 |
gaattcaattatacataaacaataaaattcaaagtccaaatgctcattatgagttatgagctagttaatcatttgtacagctctctttcaatcccattta |
545 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54307890 |
gaatttaattgtacataaacaacaaaattcaaagtccaaatgctcattatgagttatgaactagttaatcatttgtacagctctctttcagtcccatttg |
54307791 |
T |
|
| Q |
546 |
tatatatctcttcctttttgtggtattgtataaattgtgaatattatttacaactt--ttttcatttggacttctgcttttcatctcttt |
633 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| || | ||||||||||| |
|
|
| T |
54307790 |
tatatatttcttcctttttatggtattgtataaattgtgaatattatttacaactttttttttatttggacttttggtgttcatctcttt |
54307701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 31306850 - 31306903
Alignment:
| Q |
140 |
tgtctgcagattagagaatttgttgcagatcatttggctttaagaggtattgaa |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||| |||||||||||||| |
|
|
| T |
31306850 |
tgtctgcagattagagattttgttgcagaaaatatggcactaagaggtattgaa |
31306903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University