View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17443_high_4 (Length: 212)
Name: NF17443_high_4
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17443_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 41654698 - 41654493
Alignment:
| Q |
1 |
gatgtacctgaagacaaagacat---cgataagatcttctagaaaagaatattgaatccacaactttccaaataatg--ttgatattataaag-----tg |
90 |
Q |
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| T |
41654698 |
gatgtacctgaagacaaagacatgatcgataagatcttctagaaaagaatattgaatccacaactttccaaataaaaaatttaactaattaatgttgata |
41654599 |
T |
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| Q |
91 |
tattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaaga |
190 |
Q |
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| T |
41654598 |
ttttacaggatgaaaatttaacgagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaaga |
41654499 |
T |
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| Q |
191 |
tggtgt |
196 |
Q |
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|||||| |
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| T |
41654498 |
tggtgt |
41654493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 28816039 - 28816158
Alignment:
| Q |
70 |
taatgttgatattataaagtgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttg |
169 |
Q |
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| T |
28816039 |
taattttgatattatacagtgcattaccggatggaaatttaaggagttgaccgaatatatctcgttactttctctgtggcatttaaaagtaaaattcttg |
28816138 |
T |
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| Q |
170 |
tcttgtaatgcatcatcaag |
189 |
Q |
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| T |
28816139 |
ctttgttgtgcatcatcaag |
28816158 |
T |
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