View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17443_low_2 (Length: 394)
Name: NF17443_low_2
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17443_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 29007432 - 29007039
Alignment:
| Q |
1 |
cgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007432 |
cgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatga |
29007333 |
T |
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| Q |
101 |
gggtcgtttgggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctttcagctatcaactagctagctcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29007332 |
gggtcgtttgggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctttcagctatcaactagctagctcac |
29007233 |
T |
|
| Q |
201 |
actagacagtttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007232 |
actagacagtttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaat |
29007133 |
T |
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| Q |
301 |
tgttccaaagtgagtgatgttcttgtgttgctaatgtgagaatctttgctactgtgaatttgtttgttagcaaatgaacttgtttagttcaaag |
394 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007132 |
tgttccaaagtgagtgatgatcttgtgttgctaatgtgagaatctttgctactgtgaatttgtttgttagcaaatgaacttgtttagttcaaag |
29007039 |
T |
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