View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17443_low_3 (Length: 291)
Name: NF17443_low_3
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17443_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 48932171 - 48932452
Alignment:
| Q |
1 |
aagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataa |
100 |
Q |
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| T |
48932171 |
aagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataa |
48932270 |
T |
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| Q |
101 |
aactgctgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtt |
200 |
Q |
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| T |
48932271 |
aactgctgcactgaatagcgtgaaaagccattttttttcagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtt |
48932370 |
T |
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| Q |
201 |
tggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaacctctatgttgatgatg |
282 |
Q |
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| T |
48932371 |
tggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaaactctatgttgatgatg |
48932452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 9392485 - 9392211
Alignment:
| Q |
7 |
gagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgc |
106 |
Q |
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| T |
9392485 |
gagggtaatgagaaccatgttgaacaagagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgc |
9392386 |
T |
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| Q |
107 |
tgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtttggtta |
206 |
Q |
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| T |
9392385 |
tacactgaatagcgtgaaaagcca-tttttttcagctcccataactaatttcactatgtgggcatatgaaatcaacgattttgagaagtggg-ttggtta |
9392288 |
T |
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| Q |
207 |
aagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaacctctatgttgatgatgt |
283 |
Q |
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|||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
9392287 |
aagtttggattttgaaactatttgtgttaatgggtcattgaagatcttggatttttgaaactctatgttgatgatgt |
9392211 |
T |
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