View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17443_low_4 (Length: 288)
Name: NF17443_low_4
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17443_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 32 - 281
Target Start/End: Complemental strand, 3759074 - 3758825
Alignment:
| Q |
32 |
gttacggctatggtactcattcaaaaactttctagtagcttcctccaccttagccctaccctcttccaccccacaaaaacgtaccgttttgtaatcattt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
3759074 |
gttacggctatggtactcattcaaaaactttctagtagcttcctccaccttagctctaccctcttccactccacaaaaaccaacagttttgtaatcattt |
3758975 |
T |
|
| Q |
132 |
ctaccacaaaatgacgcggttttgctcaaacaagaccgtgaaaatgaagaagcagatgaacacgtggaagctacttttccctcatgagtctcccacgtgt |
231 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3758974 |
ctaccacaaaatgacgctgttttgctcaaacaagaccgcgaaaacgaagaagcagatgaacacgtggaagctacttttccctcatgagtctcccacgtgt |
3758875 |
T |
|
| Q |
232 |
tcatttgcttcttcgtctttgttggtttctcagtcttcgttttcatctca |
281 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
3758874 |
tcatctgcttcttcgtctttgttggtttctcagtcttcattttcttctca |
3758825 |
T |
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