View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17443_low_6 (Length: 237)

Name: NF17443_low_6
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17443_low_6
NF17443_low_6
[»] chr3 (15 HSPs)
chr3 (55-220)||(50558578-50558750)
chr3 (1-45)||(11308211-11308255)
chr3 (1-45)||(39074560-39074604)
chr3 (1-45)||(40362580-40362624)
chr3 (1-45)||(43787013-43787057)
chr3 (1-45)||(52520823-52520867)
chr3 (1-46)||(6842761-6842806)
chr3 (1-46)||(10617283-10617328)
chr3 (1-45)||(43269739-43269783)
chr3 (3-45)||(52718250-52718292)
chr3 (1-46)||(272362-272407)
chr3 (1-46)||(46352776-46352821)
chr3 (1-46)||(49893473-49893518)
chr3 (1-45)||(858731-858775)
chr3 (1-45)||(4168325-4168369)
[»] chr2 (11 HSPs)
chr2 (1-45)||(22068320-22068364)
chr2 (1-46)||(30486352-30486397)
chr2 (1-45)||(20553073-20553117)
chr2 (1-46)||(22887892-22887937)
chr2 (1-46)||(31390154-31390199)
chr2 (1-46)||(32360868-32360913)
chr2 (1-45)||(22567744-22567788)
chr2 (1-45)||(27856396-27856440)
chr2 (1-45)||(31438788-31438832)
chr2 (1-45)||(4381937-4381981)
chr2 (1-45)||(44588044-44588088)
[»] chr1 (19 HSPs)
chr1 (1-45)||(51065748-51065792)
chr1 (1-45)||(18043304-18043348)
chr1 (1-45)||(29210536-29210580)
chr1 (1-45)||(47010135-47010179)
chr1 (1-46)||(24178462-24178507)
chr1 (1-46)||(30657744-30657789)
chr1 (1-45)||(5694463-5694507)
chr1 (1-45)||(12072062-12072106)
chr1 (1-45)||(14350279-14350322)
chr1 (1-45)||(29657913-29657957)
chr1 (1-45)||(38701937-38701981)
chr1 (1-45)||(42769990-42770034)
chr1 (1-45)||(45449244-45449288)
chr1 (1-44)||(13961353-13961396)
chr1 (1-44)||(38162992-38163035)
chr1 (1-39)||(52431723-52431761)
chr1 (1-46)||(48383110-48383155)
chr1 (1-45)||(15227881-15227925)
chr1 (1-45)||(21112681-21112725)
[»] chr8 (13 HSPs)
chr8 (1-46)||(34228824-34228869)
chr8 (4-45)||(3930233-3930274)
chr8 (1-46)||(16394060-16394105)
chr8 (1-46)||(16888543-16888588)
chr8 (1-45)||(168608-168652)
chr8 (1-45)||(4537744-4537788)
chr8 (1-45)||(13643153-13643197)
chr8 (1-45)||(13743578-13743622)
chr8 (1-44)||(30675574-30675617)
chr8 (1-46)||(7304517-7304562)
chr8 (1-45)||(2805260-2805304)
chr8 (1-45)||(27988500-27988543)
chr8 (1-45)||(28045802-28045845)
[»] chr7 (6 HSPs)
chr7 (1-46)||(24438619-24438664)
chr7 (1-46)||(4628708-4628753)
chr7 (3-46)||(24798402-24798445)
chr7 (1-45)||(13064876-13064920)
chr7 (1-45)||(34333425-34333469)
chr7 (1-45)||(34606403-34606447)
[»] chr6 (8 HSPs)
chr6 (1-45)||(392238-392282)
chr6 (1-45)||(32929508-32929552)
chr6 (1-46)||(3515908-3515953)
chr6 (4-45)||(18276612-18276653)
chr6 (1-45)||(4215837-4215881)
chr6 (1-45)||(32985193-32985237)
chr6 (3-45)||(34706865-34706907)
chr6 (1-45)||(23402280-23402324)
[»] chr5 (11 HSPs)
chr5 (5-45)||(11957967-11958007)
chr5 (1-45)||(34650833-34650877)
chr5 (8-45)||(8927556-8927593)
chr5 (1-45)||(8787481-8787525)
chr5 (1-45)||(35132663-35132707)
chr5 (3-46)||(31467864-31467907)
chr5 (1-39)||(6283704-6283742)
chr5 (1-46)||(19647676-19647721)
chr5 (1-45)||(10070091-10070135)
chr5 (1-45)||(13661950-13661994)
chr5 (1-45)||(40564404-40564448)
[»] chr4 (10 HSPs)
chr4 (1-45)||(16820994-16821038)
chr4 (1-45)||(4089284-4089328)
chr4 (1-45)||(16536190-16536234)
chr4 (1-45)||(29591331-29591375)
chr4 (1-45)||(54054671-54054715)
chr4 (1-46)||(4268821-4268866)
chr4 (1-46)||(12356386-12356431)
chr4 (1-45)||(33108673-33108717)
chr4 (1-45)||(36395241-36395285)
chr4 (1-45)||(50619228-50619271)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-46)||(10852-10897)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-45)||(6110-6154)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 55 - 220
Target Start/End: Complemental strand, 50558750 - 50558578
Alignment:
Q  55 attctcttatttatattagttaaaaactcaccctctaccaataaatnnnnnnnctcacataatattaatgcttttaaacgttcttctttgatcatgataa 154  Q
    |||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||    
T  50558750 attctcttatttatgttagttaaaaactcaccctctaccaataaataaaaacactcacataatattaatgcttttaaatgttcttctttgatcatgataa 50558651  T
Q  155 ttagacctcttaaaagtattccatc-------agtttatatgtcattctaacaaaatatgcttatcctaaatt 220  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  50558650 ttagacctcttaaaagtattccatctaatctaagtttatatgtcattctaacaaaatatgcttatcctaaatt 50558578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11308255 - 11308211
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  11308255 tggtatgcttaaccaatgccccaggggcaccgattagcaggaccc 11308211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39074560 - 39074604
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  39074560 tggtatgcttaaccagtgccccaggggcaccggttagcaggaccc 39074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40362624 - 40362580
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  40362624 tggtatgcttaaccagtgccccgggggtaccgattagcaggaccc 40362580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43787013 - 43787057
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  43787013 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 43787057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 52520823 - 52520867
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  52520823 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 52520867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6842761 - 6842806
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||||| |||||| || |||||||||||||    
T  6842761 tggtatgcttaaccagtgccccgggggcagcggttagcaggaccca 6842806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10617328 - 10617283
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||    
T  10617328 tggtatgcttaacccgtgccccgggggcaccggttagcaggaccca 10617283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43269783 - 43269739
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||    
T  43269783 tggtatgcttaaccagtgccccggaggcaccggttagcaggaccc 43269739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 52718250 - 52718292
Alignment:
Q  3 gtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||| || || |||||||||||||||||    
T  52718250 gtatgcttaaccagtgcccaagaggaaccgattagcaggaccc 52718292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 272362 - 272407
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||| | ||||||| ||||||||| |||||||||||||    
T  272362 tggtatgcttaatcggtgccccgggggcaccggttagcaggaccca 272407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46352776 - 46352821
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||| ||||||| | ||||||| |||||||||||||    
T  46352776 tggtatgcttaacccgtgccccggaggcaccggttagcaggaccca 46352821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49893473 - 49893518
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||| ||||||||| ||||||||| ||||| |||||||    
T  49893473 tggtatgcttaatcagtgccccgggggcaccggttagccggaccca 49893518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 858731 - 858775
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||| ||||||||| ||||| ||||||    
T  858731 tggtatgcttaacccgtgccccgggggcaccggttagccggaccc 858775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4168325 - 4168369
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| || |||| ||||||||| ||||||||||||    
T  4168325 tggtatgcttaacccgtaccccgggggcaccggttagcaggaccc 4168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22068364 - 22068320
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  22068364 tggtatgcttaaccagtgccccgggggcaccgattagcaggaccc 22068320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30486352 - 30486397
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  30486352 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccca 30486397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20553073 - 20553117
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  20553073 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 20553117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22887892 - 22887937
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||||||| || |||||||||||||||| ||||||    
T  22887892 tggtatgcttaaccagtgctccgggggcaccgattagcatgaccca 22887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31390154 - 31390199
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||| |||| || |||||||||||||||||||||||    
T  31390154 tggtatgcttaacccgtgctccgggggcaccgattagcaggaccca 31390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32360913 - 32360868
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  32360913 tggtatgcttaaccaatgccccgggggcaccggttagcaggaccca 32360868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22567744 - 22567788
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||    
T  22567744 tggtatgcttaacccgtgctccaggggcaccggttagcaggaccc 22567788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27856440 - 27856396
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| |||||| || ||||||||||||    
T  27856440 tggtatgcttaaccagtgccccgggggcatcggttagcaggaccc 27856396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31438788 - 31438832
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||    
T  31438788 tggtatgcttaaccagtgccccggggacaccggttagcaggaccc 31438832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4381937 - 4381981
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| || |||| | ||||||||||||    
T  4381937 tggtatgcttaaccagtgccccgggagcactggttagcaggaccc 4381981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44588044 - 44588088
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||| |||||||| |||| |||| ||||||||||||    
T  44588044 tggtatgcttaacaagtgccccgggggtaccggttagcaggaccc 44588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51065792 - 51065748
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  51065792 tggtatgcttaaccagtgccccaggggcaccggttagcaggaccc 51065748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18043304 - 18043348
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  18043304 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 18043348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29210536 - 29210580
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  29210536 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 29210580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47010135 - 47010179
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  47010135 tggtatgcttaaccagtgctccaggggcaccggttagcaggaccc 47010179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24178507 - 24178462
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  24178507 tggtatgcttaaccagtgccccgggggcaccggttagccggaccca 24178462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30657744 - 30657789
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||    
T  30657744 tggtatgcttaaccagtaccccggaggcaccgattagcaggaccca 30657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5694463 - 5694507
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||    
T  5694463 tggtatgcttaaccagtgctccgggggcaccggttagcaggaccc 5694507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12072106 - 12072062
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||    
T  12072106 tggtatgcttaaccagtgccccgggggcaccggttagcagcaccc 12072062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14350322 - 14350279
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  14350322 tggtatgcttaaccagtgcccc-ggggcaccggttagcaggaccc 14350279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29657913 - 29657957
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||    
T  29657913 tggtatgcttaaccagtgccctgggggcaccggttagcaggaccc 29657957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38701981 - 38701937
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||    
T  38701981 tggtatgcttaaccagtgccccgagggcaccggttagcaggaccc 38701937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42770034 - 42769990
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||    
T  42770034 tggtatgcttaaccagtgccccgggggcaccggttagcagaaccc 42769990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45449288 - 45449244
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||    
T  45449288 tggtatgtttaaccagtgccccaggggcatcggttagcaggaccc 45449244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13961353 - 13961396
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggacc 44  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||    
T  13961353 tggtatgcttaaccagtgctccaagggcaccggttagcaggacc 13961396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38162992 - 38163035
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggacc 44  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||    
T  38162992 tggtatgcttaacccgtgccccgggggcaccggttagcaggacc 38163035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52431723 - 52431761
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagca 39  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  52431723 tggtatgcttaaccagtgccccagggacaccggttagca 52431761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48383155 - 48383110
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||| |||| ||||||||| | |||||||||||||    
T  48383155 tggtatgcttaaccaatgcctcaggggcactggttagcaggaccca 48383110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15227881 - 15227925
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||    
T  15227881 tggtatgcttaaccagtgccccggaggcaccggttagcaagaccc 15227925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21112725 - 21112681
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||| ||||||||  |||||||| ||||||||||||    
T  21112725 tggtatgcttaactagtgccccgagggcaccggttagcaggaccc 21112681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34228824 - 34228869
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  34228824 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccca 34228869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 3930274 - 3930233
Alignment:
Q  4 tatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  3930274 tatgcttaaccagtgccccaggagcatcgattagcaggaccc 3930233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16394105 - 16394060
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  16394105 tggtatgcttaaccaatgccccgggggcaccggttagcaggaccca 16394060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16888588 - 16888543
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  16888588 tggtatgcttaaccaatgccccgggggcaccggttagcaggaccca 16888543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 168608 - 168652
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||    
T  168608 tggtatgcttaaccaatgccccgggggcaccggttagcaggaccc 168652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4537788 - 4537744
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||    
T  4537788 tggtatgcttaacctgtgccccagaggcaccggttagcaggaccc 4537744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13643153 - 13643197
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||    
T  13643153 tggtatgcttaaccagtgccctaggagcaccggttagcaggaccc 13643197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13743578 - 13743622
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||    
T  13743578 tggtatgcttaaccagtgccctaggagcaccggttagcaggaccc 13743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30675617 - 30675574
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggacc 44  Q
    |||||||||||||||||||||| ||| ||||| |||||||||||    
T  30675617 tggtatgcttaaccagtgccccggggacaccggttagcaggacc 30675574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7304562 - 7304517
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||||||| || ||||||||| |||| ||||||||    
T  7304562 tggtatgcttaaccagtgctccgggggcaccggttagtaggaccca 7304517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2805304 - 2805260
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| | ||||||| ||||| ||||||    
T  2805304 tggtatgcttaaccagtgccccggaggcaccggttagccggaccc 2805260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27988543 - 27988500
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||    
T  27988543 tggtatgcttaaccagtg-cccgggggcaccggttagcaggaccc 27988500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28045845 - 28045802
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||    
T  28045845 tggtatgcttaaccagtg-cccgggggcaccggttagcaggaccc 28045802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24438619 - 24438664
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  24438619 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccca 24438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4628708 - 4628753
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  4628708 tggtatgcttaaccagtgccttaggggcaccggttagcaggaccca 4628753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 24798445 - 24798402
Alignment:
Q  3 gtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||| ||||||||  |||||||||||||    
T  24798445 gtatgcttaaccagtgccccgggggcaccagttagcaggaccca 24798402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13064920 - 13064876
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||| | |||||||||| ||||||| ||||    
T  13064920 tggtatgcttaaccagtgctctaggggcaccggttagcagaaccc 13064876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34333425 - 34333469
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  34333425 tggtatgtttaacccgtgccccgggggcaccggttagcaggaccc 34333469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34606403 - 34606447
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||| || |||||| ||||||||||||    
T  34606403 tggtatgcttaacccgtgccccgggagcaccggttagcaggaccc 34606447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 392238 - 392282
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  392238 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32929552 - 32929508
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  32929552 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 32929508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3515908 - 3515953
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||    
T  3515908 tggtatgtttaacctgtgccccaggggcaccggttagcaggaccca 3515953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 18276653 - 18276612
Alignment:
Q  4 tatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  18276653 tatgcttaaccagtgcccctggggcaccggttagcaggaccc 18276612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4215837 - 4215881
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| |||||| || ||||||||||||    
T  4215837 tggtatgcttaaccagtgccccgggggcatcggttagcaggaccc 4215881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32985237 - 32985193
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||    
T  32985237 tggtatgcttaaccagtgccccgggggcaccggttagcagaaccc 32985193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 34706865 - 34706907
Alignment:
Q  3 gtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||| ||||||||| |||||| |||||    
T  34706865 gtatgcttaaccagtgccccgggggcaccggttagcaagaccc 34706907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23402280 - 23402324
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||| | ||||||| ||||||||||||    
T  23402280 tggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 23402324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 11958007 - 11957967
Alignment:
Q  5 atgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  11958007 atgcttaaccagtgccccaggggcaccggttagcaggaccc 11957967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34650877 - 34650833
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  34650877 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 34650833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 8927593 - 8927556
Alignment:
Q  8 cttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  8927593 cttaaccagtgccccaggggcaccggttagcaggaccc 8927556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8787481 - 8787525
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||    
T  8787481 tggtatgcttaacctgtgccccgggggcaccggttagcaggaccc 8787525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35132663 - 35132707
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||    
T  35132663 tggtatgcttaaccaatgccccgggggcaccggttagcaggaccc 35132707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 31467864 - 31467907
Alignment:
Q  3 gtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||    
T  31467864 gtatgcttaaccagtgccccagggacaccggttagcaagaccca 31467907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6283704 - 6283742
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagca 39  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  6283704 tggtatgcttaaccagtgccctaggggcaccggttagca 6283742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19647721 - 19647676
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||| ||||||| ||||||||| ||||| |||||||    
T  19647721 tggtatgcttaacccgtgccccgggggcaccggttagccggaccca 19647676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10070091 - 10070135
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||| || |||||| |||||| ||||||||||||    
T  10070091 tggtatgcttaaccaatgtcccaggagcaccggttagcaggaccc 10070135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13661950 - 13661994
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||| | ||||||| ||||||||||||    
T  13661950 tggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 13661994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40564448 - 40564404
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||||| | ||||| |||||||| ||||||||||||    
T  40564448 tggtatgcttaaccaataccccaagggcaccggttagcaggaccc 40564404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16820994 - 16821038
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  16820994 tggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 16821038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4089284 - 4089328
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||    
T  4089284 tggtatgtttaaccagtgccccaggggcaccagttagcaggaccc 4089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16536190 - 16536234
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||||    
T  16536190 tggtattcttaaccagtgccccgggggcaccggttagcaggaccc 16536234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29591331 - 29591375
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||    
T  29591331 tggtatgcttaactagtgccccgggggcaccggttagcaggaccc 29591375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54054671 - 54054715
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||| ||||||||| || |||||||||    
T  54054671 tggtatgcttaaccagtgccccgggggcaccggttggcaggaccc 54054715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4268866 - 4268821
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||||    
T  4268866 tggtatgattaaccagtgccccgagggcaccggttagcaggaccca 4268821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12356386 - 12356431
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    ||||||||||||||||||  || ||||||||| |||||||||||||    
T  12356386 tggtatgcttaaccagtgttccgggggcaccggttagcaggaccca 12356431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33108717 - 33108673
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||| ||||||| | ||||||| ||||||||||||    
T  33108717 tggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 33108673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36395241 - 36395285
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||    
T  36395241 tggtatgcttaaccagtgccctgggggcaccagttagcaggaccc 36395285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50619228 - 50619271
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  50619228 tggtatgcttaaccagtg-cccaggggcaccggttagcgggaccc 50619271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10852 - 10897
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccca 46  Q
    |||||||||||||||||||| | |||||| || |||||||||||||    
T  10852 tggtatgcttaaccagtgcctcgggggcagcggttagcaggaccca 10897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6154 - 6110
Alignment:
Q  1 tggtatgcttaaccagtgccccaggggcaccgattagcaggaccc 45  Q
    ||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  6154 tggtatgtttaacccgtgccccgggggcaccggttagcaggaccc 6110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University