View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17443_low_7 (Length: 227)
Name: NF17443_low_7
Description: NF17443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17443_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 32375985 - 32376151
Alignment:
| Q |
9 |
tctggtaaaaatctactgtaattgtatggttctttaagtagtttcatacttaatccatttattattaggttaaatcatttacttgaggcctcctctgcca |
108 |
Q |
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| T |
32375985 |
tctggtaaaaatctactgtaattgtatggttccttaagtagtttcatacttaatccatttattataaggttaaatcatttacttgaggcctcctctgcca |
32376084 |
T |
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| Q |
109 |
agcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
175 |
Q |
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| T |
32376085 |
agcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
32376151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 32364347 - 32364452
Alignment:
| Q |
122 |
cagcaagtaaattatggttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
221 |
Q |
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| T |
32364347 |
cagcaggtaaattttagttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
32364446 |
T |
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| Q |
222 |
acggat |
227 |
Q |
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|||||| |
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| T |
32364447 |
acggat |
32364452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 32364246 - 32364303
Alignment:
| Q |
9 |
tctggtaaaaatctactgtaattgtat--ggttctttaagtagtttcatacttaatcc |
64 |
Q |
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||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||| |
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| T |
32364246 |
tctggtaaatatctaccgtaattgtatatggttccataagtagtttcatacttaatcc |
32364303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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