View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17444_low_1 (Length: 506)
Name: NF17444_low_1
Description: NF17444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17444_low_1 |
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| [»] scaffold0008 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 31523227 - 31523519
Alignment:
| Q |
11 |
ttattctgtttccggtaatttatctattttctgatacatttttgcagttgatgtatctgatacattttttcaattgtgttgtannnnnnngttttgaaaa |
110 |
Q |
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| T |
31523227 |
ttattctgtttccggtaatttatctattttctaatacatttttgcagttgatgtatctgatacattttttcaattgtgttgtatttttttgttttggaaa |
31523326 |
T |
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| Q |
111 |
ctcggtattcagccctagaaggattaatccaaggactaatcagatattgtttcacataatacaagtatgtaaaagaaccctaaagggcctatcacaaatt |
210 |
Q |
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| T |
31523327 |
ctcggtattcagccctagaaggattaatccaaggactaatcagatattgtttcacataatacaagtatgtaaaagaaccctaaagtgcctatcacaaatt |
31523426 |
T |
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| Q |
211 |
cagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgttacatcagtgcacattataactagccctcatatcttgt |
303 |
Q |
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| T |
31523427 |
cagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgttacatcagtgcacattataactagccctcatatcttgt |
31523519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 345 - 489
Target Start/End: Original strand, 31523517 - 31523661
Alignment:
| Q |
345 |
tgtgaaagttgttaacattgtgttatataattatcttatatcacatgattgcttttgaaattggaattgaagttttttaatttcatttcctctttgtcca |
444 |
Q |
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| T |
31523517 |
tgtgaaagttgttaataatgtgttatataattatcttatatcacatgattgcttttgaaatttgaattgaagttttttaatttcatttcctctttgtcca |
31523616 |
T |
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| Q |
445 |
gaattatcatccctctagggtgcttactcttgtataccaaccatt |
489 |
Q |
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| T |
31523617 |
gaattatcatccctctagggtgcttactcttgtataccaaccatt |
31523661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 51979 - 51916
Alignment:
| Q |
426 |
ttcatttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatt |
489 |
Q |
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| T |
51979 |
ttcatttcctctctgtgcagaattatcatccctctagggtgcttactcttgtataccaaccatt |
51916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 64431 - 64372
Alignment:
| Q |
430 |
tttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatt |
489 |
Q |
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| T |
64431 |
tttcctctttgtgcagaaatatcatccctctagggtgcttactcttgtatatcagccatt |
64372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 52126 - 52060
Alignment:
| Q |
201 |
atcacaaattcagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgtta |
267 |
Q |
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| T |
52126 |
atcacaaattaagaaattttctggaaattctcaatattgtattgtttaccaacattttagattgtta |
52060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 52351 - 52303
Alignment:
| Q |
11 |
ttattctgtttccggtaatttatctattttctgatacatttttgcagtt |
59 |
Q |
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| T |
52351 |
ttattctgtttccggtaatttatctattttcctatacattttttcagtt |
52303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Original strand, 18096360 - 18096402
Alignment:
| Q |
447 |
attatcatccctctagggtgcttactcttgtataccaaccatt |
489 |
Q |
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| T |
18096360 |
attatcatccctccagggtgcttacacttgtataccagccatt |
18096402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Original strand, 37853966 - 37854008
Alignment:
| Q |
447 |
attatcatccctctagggtgcttactcttgtataccaaccatt |
489 |
Q |
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| T |
37853966 |
attatcatccctccagggtgcttacacttgtataccagccatt |
37854008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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