View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17444_low_2 (Length: 488)
Name: NF17444_low_2
Description: NF17444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17444_low_2 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 15815499 - 15815326
Alignment:
| Q |
20 |
acctacttttgcttaaaatctctagagttgttaacaaataacaacgtacaactcaataaaacagtctagctcagtgcatcaaggagatatatagtgactc |
119 |
Q |
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| T |
15815499 |
acctacttttgcttaaaatctctagagttgttaacaaataacaacgtacaactcaataaaacagtctagctcagtgcatcaaggagatatatagtgactc |
15815400 |
T |
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| Q |
120 |
acaaataacaaggacatacacaaccctattaagattgtttattaattacgacttcagtagtcttctcacaggtt |
193 |
Q |
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| T |
15815399 |
acaaataacaaggacatacacaaccctattaagattgtttattaattacgacttcagtagtcttctcgcaggtt |
15815326 |
T |
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Target: scaffold0328 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 3836 - 3662
Alignment:
| Q |
16 |
caaaacctacttttgcttaaaatctctagagttgttaacaaataacaacgtacaactcaa-taaaacagtctagctcagtgcatcaag--gagatatata |
112 |
Q |
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| T |
3836 |
caaaacctaatcttgcttaaaaactctagattggttcacaaataacaacttccaactcaactaaaatagtccagctcagtgcatcatggtgacacaaaga |
3737 |
T |
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| Q |
113 |
gtgactcacaaataacaaggacatacac--aaccctattaagattgttt-attaattacgacttcagtagtcttc |
184 |
Q |
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| T |
3736 |
gtggatcacaaataacaaggacaaacacaaaaccctaataagattctttcctcaatgacgacttcagtggtcttc |
3662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 6442019 - 6442120
Alignment:
| Q |
41 |
ctagagttgttaacaaataacaacg-tacaactcaataaaacagtctagctcagtgcatcaaggagatatatagtga--ctcacaaataacaaggacata |
137 |
Q |
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| T |
6442019 |
ctagagtggtttacaaataacaataatataactcaactaaacagtccagctcaatgcatcaaggtgatacaaagagaaactcacaaataacaaggacata |
6442118 |
T |
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| Q |
138 |
ca |
139 |
Q |
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|| |
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| T |
6442119 |
ca |
6442120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 18386172 - 18386221
Alignment:
| Q |
81 |
cagtctagctcagtgcatcaaggagatatatagtgactcacaaataacaa |
130 |
Q |
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| T |
18386172 |
cagtccagctcaatgcatcaaggtgataaatagtggctcacaaataacaa |
18386221 |
T |
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