View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17444_low_3 (Length: 425)
Name: NF17444_low_3
Description: NF17444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17444_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 136 - 416
Target Start/End: Complemental strand, 45928708 - 45928428
Alignment:
| Q |
136 |
ttggggcagtgctgatgcataatagacagcatattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
235 |
Q |
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| T |
45928708 |
ttggggcggtgctgatgcataatagacagcctattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
45928609 |
T |
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| Q |
236 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45928608 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
45928509 |
T |
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| Q |
336 |
gttgattcacattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcatattctt |
416 |
Q |
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| T |
45928508 |
gttgattctcattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctt |
45928428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 45934327 - 45934199
Alignment:
| Q |
1 |
gtctatatttcgagcctccatgcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45934327 |
gtctatatttcgagcctccatgcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcat |
45934228 |
T |
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| Q |
101 |
gataatgaaatcacccaatgcagtccgaa |
129 |
Q |
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| T |
45934227 |
gataatgaaatcacccaaggcagtccgaa |
45934199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15816561 - 15816433
Alignment:
| Q |
1 |
gtctatatttcgagcctccatgcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcat |
100 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
15816561 |
gtctatatttagagcctccatgcaagagtgttcttccatagtaatgagctttcgttccaagctggaaagtaaagaacacagaggctaattgcagttgcat |
15816462 |
T |
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| Q |
101 |
gataatgaaatcacccaatgcagtccgaa |
129 |
Q |
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| T |
15816461 |
gataatgaaatcacccaaggcagtccgaa |
15816433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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