View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17444_low_4 (Length: 383)
Name: NF17444_low_4
Description: NF17444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17444_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37608656 - 37608888
Alignment:
| Q |
1 |
tccttcttaggctttttctctgtttcactctacagtctatacaaaactaaaactagccaccatattttccttacgtgatttaccatcttgggcaattgat |
100 |
Q |
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| T |
37608656 |
tccttcttaggctttttctctgtttcactctacagtctatacaaaactaaaactagccaccatattttccttacgtgatttaccatcttgggcaattgat |
37608755 |
T |
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| Q |
101 |
gatctgtattccaatttacaagnnnnnnnttatacagcagtactccacatgactaggttaggctatacttaatgacctactttaaaaatgttaagtttga |
200 |
Q |
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| T |
37608756 |
gatctgtattccaatttactagaaaaaaattatacagcattactccacatgactaggttaggctatacttaatgacctactttaaaaatgttaagtttga |
37608855 |
T |
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| Q |
201 |
tctattaatagttatagattcatttttaaagat |
233 |
Q |
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||||||| | ||||||||||||||||||||||| |
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| T |
37608856 |
tctattatttgttatagattcatttttaaagat |
37608888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 37608961 - 37609025
Alignment:
| Q |
319 |
tttatgaaaatctccaccttaggggatagtgtagactttaataaataaacgaacaaactaataat |
383 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
37608961 |
tttatgaaaatctccaccttagtggatagtgtacacttttataaataaactaacaaactaataat |
37609025 |
T |
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