View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17444_low_5 (Length: 321)
Name: NF17444_low_5
Description: NF17444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17444_low_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 39702779 - 39702563
Alignment:
| Q |
1 |
caaaacccatcctttatagctcaaacacatgaaccacaattgaagcacctatatcatgatttttcatatgtaaccttcatagcattgctactgtacgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39702779 |
caaaacccatcctttatagctcaaacacatgaaccacaattgaagcacctatatcatgatttttcatatgtaaccttcatagcattgctactgtacgcat |
39702680 |
T |
|
| Q |
101 |
ggcatgatggcataacnnnnnnnttatgaacaaaataacattgctaatgctagtacaaaatactaatttctctataaccaaaataacattgcagtttcta |
200 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39702679 |
ggcatgatggcataacaaaaaaaatatgaacaaaataacattgctaatgctagtacaaaatactaatttctctataaccaaaataacattgcagtttcta |
39702580 |
T |
|
| Q |
201 |
aattcaattaccagtac |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
39702579 |
aattcaattaccagtac |
39702563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 39702501 - 39702459
Alignment:
| Q |
279 |
gtagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39702501 |
gtagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
39702459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 22512649 - 22512691
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
22512649 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
22512691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42884033 - 42884249
Alignment:
| Q |
1 |
caaaacccatcctttatagctcaaacacatgaaccacaattgaagcacctatatcatgatttttcatatgtaaccttcatagcattgctactgtacgcat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42884033 |
caaaacccatcctttatagctcaaacacatgaatcacaattgaagcacctatatcatgattttccatatgtaaccttcatagcattgctactgtacgcat |
42884132 |
T |
|
| Q |
101 |
ggcatgatggcataacnnnnnnnttatgaacaaaataacattgctaatgctagtacaaaatactaatttctctataaccaaaataacattgcagtttcta |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42884133 |
ggcatgatggcataacaaaaaaaagatgaacaaaataacattgctaatgctagtacaaaatactaatttctctataaccaaactaacattgcagtttcta |
42884232 |
T |
|
| Q |
201 |
aattcaattaccagtac |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
42884233 |
aattcaattaccagtac |
42884249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 32103340 - 32103405
Alignment:
| Q |
148 |
tgctagtacaaaatactaatttctctataaccaaaataacattgcagtttctaaattcaattacca |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32103340 |
tgctagtacaaaatgttaatttctctataaccaaaataacattgcagtttcaaaattcaattacca |
32103405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 42884312 - 42884353
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42884312 |
tagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
42884353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 32103476 - 32103518
Alignment:
| Q |
279 |
gtagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32103476 |
gtagcaatcatgaatcaacaatatcaaacaacaaccaatctta |
32103518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 21525651 - 21525820
Alignment:
| Q |
50 |
tatatcatgatttttcatatgtaaccttcatagcattgctactgtacgcatggcatgatggcataacnnnnnnnttatgaacaaaataacattgctaatg |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| || |
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| T |
21525651 |
tatatcatgatttttcatatgtaaccttcatagcattgctactgtacgcatggcatgatggaataacaacaaaaatatgaacaatataacattgctactg |
21525750 |
T |
|
| Q |
150 |
------ctagtacaaaatactaatttctctataaccaaaataacattgcagtttctaaattcaattacca |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
21525751 |
cctactctaatacaaaatactaatttctctataaccaaaataacattgcagtttcaaaattcaattacca |
21525820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 21525887 - 21525929
Alignment:
| Q |
279 |
gtagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21525887 |
gtagcaatcatcaatcaacaatatcaaacaacaaccaatctta |
21525929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 19976881 - 19976839
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
19976881 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
19976839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 41593856 - 41593814
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
41593856 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
41593814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 12869922 - 12869964
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
12869922 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
12869964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 14006725 - 14006683
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
14006725 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
14006683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 23124074 - 23124116
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
23124074 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
23124116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 43522460 - 43522418
Alignment:
| Q |
280 |
tagcaatcatcaatcaacaat-atcaaacaacaaccaatctta |
321 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43522460 |
tagcaatcatcaatcaaaaattatcaaacaacaaccaatctta |
43522418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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