View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17444_low_6 (Length: 264)
Name: NF17444_low_6
Description: NF17444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17444_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 66 - 246
Target Start/End: Original strand, 45934582 - 45934762
Alignment:
| Q |
66 |
ctggacagattggaagcggtggatgggaaaccagggtggtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctg |
165 |
Q |
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| T |
45934582 |
ctggacagattggaagcggtggatgggaaaccagggtggtattggtattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacatctg |
45934681 |
T |
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| Q |
166 |
aaatactccaatgtccgagggaaaatacttgagattgttcttgcatgtcgtttctttatctatcaatatggaatcatctac |
246 |
Q |
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| T |
45934682 |
aaatactccaatgtccgagggaaaatacttgagattgtttttgcatgtcgtttctttatctatcaatatggaatcatctac |
45934762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 45934458 - 45934506
Alignment:
| Q |
17 |
atatcgaagctcgactcttaatttccttatcacaatctcaatgtggttt |
65 |
Q |
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| T |
45934458 |
atatcgaagctcgactcttaatttccttatcacaatctcaatgtggttt |
45934506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 15816822 - 15816988
Alignment:
| Q |
73 |
gattggaagcggtggatgggaaaccagggtggtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatact |
172 |
Q |
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| T |
15816822 |
gattggaagcggtggatgggaaaccgtggtggtattggtattccatctgataaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatact |
15816921 |
T |
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| Q |
173 |
ccaatgtccgagggaaaatacttgagattgttcttgcatgtcgtttctttatctatcaatatggaat |
239 |
Q |
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| T |
15816922 |
ccaatgtccgagggaaaatacttgagattgttcttgcatgccgcttctttatctaccaatatggaat |
15816988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 15816696 - 15816740
Alignment:
| Q |
21 |
cgaagctcgactcttaatttccttatcacaatctcaatgtggttt |
65 |
Q |
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| T |
15816696 |
cgaagctcaactctttatttcttcatcacaatctcaatgtggttt |
15816740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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