View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17445_high_15 (Length: 356)
Name: NF17445_high_15
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_high_15 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 30680394 - 30680066
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30680394 |
aatatccatagttcgaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaa |
30680295 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30680294 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattgatatcatccaaaatcatcacctcttatagtttctgtggttcag |
30680195 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcattcca |
310 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30680194 |
ctgaagtatcctcttgctttcagcaaaagcagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcattcca |
30680095 |
T |
|
| Q |
311 |
caacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
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|
| T |
30680094 |
caacatatctgacacaaacataatgaaat |
30680066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 30716572 - 30716244
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30716572 |
aatatccatagttcaaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaa |
30716473 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30716472 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagattctgtggttcag |
30716373 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcattcca |
310 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
30716372 |
ctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgataaataaaattgtccgacacaaacatggctgcaagtcagcagcattcca |
30716273 |
T |
|
| Q |
311 |
caacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
30716272 |
caacatatctgacacaaacataatgaaat |
30716244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 30056830 - 30057161
Alignment:
| Q |
10 |
aagaatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatat |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30056830 |
aagaatatccatagttcgaagcgaaataagtgtcacctgttcagtttcataggagatgctctctgtaagtgatatgactaatgctaatatactaaaatat |
30056929 |
T |
|
| Q |
110 |
a--gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtt |
207 |
Q |
| |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30056930 |
aaagagttaaaagataaaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtt |
30057029 |
T |
|
| Q |
208 |
cagctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcatt |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
30057030 |
tagctgaagcatcctcttgctttcaggaaaaacagtggacacaacacaacttgatcaataacattgttcgacacaaacatggctgcgatttagcagcatt |
30057129 |
T |
|
| Q |
308 |
ccacaacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
30057130 |
ccacaacatatctgacacaaacataatgaaat |
30057161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 30480489 - 30480723
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||||||||||||| ||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
30480489 |
aatatccatagttcaaagagaaataaatggctcctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatctactaaaatatatg |
30480588 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
30480589 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccgaaattatcacctcttatagtttctgtggttcag |
30480688 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtgg |
245 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |
|
|
| T |
30480689 |
ctgaagcatcctcttgctttcaggaaaagcagtgg |
30480723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 165 - 339
Target Start/End: Original strand, 30746455 - 30746629
Alignment:
| Q |
165 |
ttcatatcatccaaaatcatcacctcttatagtttctgtggttcagctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatca |
264 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
30746455 |
ttcatatcatccaaaatcatcaccttttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgatca |
30746554 |
T |
|
| Q |
265 |
ataacattgtccgacacaaacatggctgcgattcagcagcattccacaacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30746555 |
ataacattgtccgacacaaacatggctgtgattcagcagcattccacaacatatctgacacaaacataatgaaat |
30746629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 30433024 - 30433205
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||||||||| ||| ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
30433024 |
aatatccatatttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactaaaatatatg |
30433123 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctctt |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30433124 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacagttgatttcttgttcatatcatccaaaatcatcacctctt |
30433205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 30433226 - 30433315
Alignment:
| Q |
251 |
acacaacttgatcaat-aacattgtccgacacaaacatggctgcgattcagcagcattccacaacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30433226 |
acacaacttgatcaattaacattgtccaacacaaacatggttgggattcagcagcattccacaacatatctgacacaaacataatgaaat |
30433315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 30203879 - 30204043
Alignment:
| Q |
13 |
aatatccatagttcgaagc--aaaataagtgtcacctgttcagtttcacaggagatg-ctctctgtaagtgatatgactaatgctaatatacgaaaatat |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||||||||| ||||||| | | |||||||| ||||| ||| ||||||||||| | | | ||||| |
|
|
| T |
30203879 |
aatatccatagttcgaagagaaaaataaatggcacctgttcagttccacaggaaaaggctctctgttagtgaaatggctaatgctaatctgctataatat |
30203978 |
T |
|
| Q |
110 |
a--gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatc |
172 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
30203979 |
atggagttaaaagatgccaaattcactttgttatcaaataaaactgttgatttctcattcgtatc |
30204043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 30480723 - 30480789
Alignment:
| Q |
273 |
gtccgacacaaacatggctgcgattcagcagcattccacaacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30480723 |
gtccgacacaaatatggttgggattcagcagcattccacaacatatctgacacaaacataatgaaat |
30480789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 30396996 - 30397080
Alignment:
| Q |
86 |
actaatgctaatatacgaaaatatag--agttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattca |
168 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
30396996 |
actaatgctaatctactaaaatatacgtagttaaaagatggaaaattcactttgttataaaataaaacaattgatttctcattca |
30397080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 40660716 - 40660748
Alignment:
| Q |
307 |
tccacaacatatctgacacaaaaataatgaaat |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
40660716 |
tccacaacatatctgacacaaacataatgaaat |
40660748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 20302550 - 20302259
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||| ||||||||| ||| |||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20302550 |
aatagccatagttcaaagagaaataaatggcacctgttcggttacacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatatatg |
20302451 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20302450 |
gagttaaaagatgcaaaattcactttgttatcaaataaaatggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
20302351 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaa-taacattgtccgacacaaacatggctgcgattcagcagcat |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||| ||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
20302350 |
ctgaagcatcctcttgctttcaggaaaagcagtggaca-----caacttgatcaattaatattgtccgacacaaacatggttgggattcagcagcat |
20302259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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