View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17445_high_22 (Length: 322)

Name: NF17445_high_22
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17445_high_22
NF17445_high_22
[»] chr4 (4 HSPs)
chr4 (19-202)||(55203265-55203449)
chr4 (132-315)||(55205731-55205915)
chr4 (100-156)||(10032286-10032342)
chr4 (100-150)||(1856676-1856726)
[»] chr7 (5 HSPs)
chr7 (129-315)||(46513396-46513583)
chr7 (104-315)||(46164460-46164675)
chr7 (242-315)||(10091686-10091757)
chr7 (104-153)||(46169318-46169367)
chr7 (242-311)||(26339860-26339928)
[»] chr1 (4 HSPs)
chr1 (104-315)||(48986045-48986260)
chr1 (104-208)||(48990848-48990953)
chr1 (108-153)||(25491998-25492043)
chr1 (100-153)||(52433030-52433083)
[»] chr3 (2 HSPs)
chr3 (123-158)||(34374786-34374821)
chr3 (100-158)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (100-153)||(11167-11221)
[»] chr2 (2 HSPs)
chr2 (100-156)||(18259213-18259270)
chr2 (267-315)||(10258339-10258387)
[»] chr6 (1 HSPs)
chr6 (100-156)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 55203265 - 55203449
Alignment:
Q  19 gttaggggattgaagattgcgacggagaccttcacagaataggattatttcagggagaaggcgaccgtgtga-ttcgtttattgaatgacatgtggaaga 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55203265 gttaggggattgaatattgcgacggagaccttcacagaataggatcatttcagggagaaggcgaccgtgtgaattcgtttattgaatgacatgtggaaga 55203364  T
Q  118 aagggattcaatggttcagattaaaaataaacaaaacatcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  55203365 aagggattcaatggttcagattaaaaataaacaaaacatcagcttttttaattaaaaaacaaaatagaggagaaacacgcgcttc 55203449  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 132 - 315
Target Start/End: Complemental strand, 55205915 - 55205731
Alignment:
Q  132 ttcagattaaaaataaacaaaacatcagnnnnnnn-aattaaaaaacaaaatagaggagaaacacgcgcttctcttcttcttctctcgtacatgaacttt 230  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  55205915 ttcagattaaaaataaacaaaacatcagttttttttaattaaaaaacaaaatagaggagaaacacgcgcttctcttcttcttctctcttacgtgaacttt 55205816  T
Q  231 actcactctctgcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcatctca 315  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55205815 actcactctctgcttccctcggaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcatctca 55205731  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 10032342 - 10032286
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 156  Q
    |||||||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  10032342 tgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaaacat 10032286  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 1856726 - 1856676
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaaca 150  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  1856726 tgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 315
Target Start/End: Complemental strand, 46513583 - 46513396
Alignment:
Q  129 tggttcagattaaaaataaacaaaacatcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttctcttcttcttct-ctcgtacatgaac 227  Q
    |||||||||||||||||||||||||||||||       |||||||||| |||||||||||||| ||||||||| |||||| ||||| || |||| |||||    
T  46513583 tggttcagattaaaaataaacaaaacatcagcttttttaattaaaaaaaaaaatagaggagaa-cacgcgcttgtcttct-cttcttctagtacgtgaac 46513486  T
Q  228 tttactcactctct---gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcatctca 315  Q
     |||| | |||| |   |||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||||    
T  46513485 gttacactctcttttgagcttccctcagaatctcttcgtctcccc-tctcaccagcaccaacaaccgccgattgtgtcgccgttcatctca 46513396  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 315
Target Start/End: Original strand, 46164460 - 46164675
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa-catcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 202  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||       ||| |||||   | | |||| |  ||||||||||||    
T  46164460 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaaacatcagtttttttaataaaaaagagagagagagca--aacacgcgcttc 46164557  T
Q  203 tcttct--tcttctctcgtacatgaactttactcactctct-----gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccga 295  Q
    ||||||  |||||| || ||| ||||| || | ||||||||     |||||||| |||| |||||||| ||||  | |||||||||||||||||| ||||    
T  46164558 tcttctcttcttctttcatacgtgaacgttgcccactctcttttcagcttcccttagaacctcttcgtttccc--tgtcatcagcgccaacaaccgccga 46164655  T
Q  296 ttgtgccgccgttcatctca 315  Q
    ||||||||||||||||||||    
T  46164656 ttgtgccgccgttcatctca 46164675  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 10091686 - 10091757
Alignment:
Q  242 gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcatctca 315  Q
    |||||||||| || |||||||| ||||  ||||||||||||||||||||  |||||||||||||||||||||||    
T  10091686 gcttccctcaaaacctcttcgtttccc--tctcatcagcgccaacaaccgtcgattgtgccgccgttcatctca 10091757  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 46169367 - 46169318
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  46169367 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 46169318  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 26339928 - 26339860
Alignment:
Q  242 gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcat 311  Q
    ||||||||| |||||||||| ||||||| |||||||| ||||||||| |  ||||| | |||||||||||    
T  26339928 gcttccctcggaatctcttcctctcccc-tctcatcaccgccaacaatcgtcgattattccgccgttcat 26339860  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 315
Target Start/End: Original strand, 48986045 - 48986260
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa-catcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 202  Q
    |||||||||| | ||| |||||||||| |||||||||||||||||||||| ||||||       ||| |||||   | | |||| |  ||||||||||||    
T  48986045 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaaacatcagtttttttaataaaaaagagagagagagca--aacacgcgcttc 48986142  T
Q  203 tcttct--tcttctctcgtacatgaactttactcactctct-----gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccga 295  Q
    ||||||  |||||| || ||| ||||| |||| ||||||||     |||||||| |||| |||||||| ||||  | |||||||||||||||||| ||||    
T  48986143 tcttctcttcttctttcatacgtgaacgttacccactctcttttcagcttcccttagaacctcttcgtttccc--tgtcatcagcgccaacaaccgccga 48986240  T
Q  296 ttgtgccgccgttcatctca 315  Q
    ||||| ||||||||||||||    
T  48986241 ttgtgtcgccgttcatctca 48986260  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 48990953 - 48990848
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa-catcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 202  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||       |||||||||| || | ||||   |||||||||||||    
T  48990953 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaaacatcagtttttttaattaaaaaaaaagagagagagcaaacacgcgcttc 48990854  T
Q  203 tcttct 208  Q
    ||||||    
T  48990853 tcttct 48990848  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 25492043 - 25491998
Alignment:
Q  108 atgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||    
T  25492043 atgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 25491998  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 52433030 - 52433083
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    ||||||||| |||| | ||| | |||||||||||||||||||||||||||||||    
T  52433030 tgaatgacacgtggcacaaatgaattcaatggttcagattaaaaataaacaaaa 52433083  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 34374821 - 34374786
Alignment:
Q  123 attcaatggttcagattaaaaataaacaaaacatca 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374821 attcaatggttcagattaaaaataaacaaaacatca 34374786  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 34374007 - 34374065
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatca 158  Q
    |||||||||||||| | |||  |||||||||||| |||||||||||||| |||||||||    
T  34374007 tgaatgacatgtggcaaaaaatgattcaatggtttagattaaaaataaataaaacatca 34374065  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 11167 - 11221
Alignment:
Q  100 tgaatgacatgtgg-aagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||| |||||    
T  11167 tgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaaa 11221  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 18259270 - 18259213
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcaga-ttaaaaataaacaaaacat 156  Q
    |||||||||||||| | |||  |||||||||||||| | |||||||||||||||||||    
T  18259270 tgaatgacatgtggcaaaaaaagattcaatggttcatatttaaaaataaacaaaacat 18259213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 10258387 - 10258339
Alignment:
Q  267 cccctctcatcagcgccaacaaccaccgattgtgccgccgttcatctca 315  Q
    |||||||||||| ||||| || ||||||||||| || ||||||||||||    
T  10258387 cccctctcatcaccgccaccatccaccgattgtaccaccgttcatctca 10258339  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 6356433 - 6356377
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 156  Q
    |||||||||||||| | |||  |||||||| ||||||||| ||||||| ||||||||    
T  6356433 tgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataatcaaaacat 6356377  T

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