View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_high_25 (Length: 309)
Name: NF17445_high_25
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_high_25 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 10069250 - 10068942
Alignment:
| Q |
1 |
aatcccaaaaatttgctttattttattttcatcctctattgcaactatataaagtcacatagacatacacttaatattcatccactacctatccttgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069250 |
aatcccaaaaatttgctttattttattttcatcctctattgcaactatataaagtcgcatagacatacacttaatattcatccactacctatccttgtct |
10069151 |
T |
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| Q |
101 |
ttgcctaaccacttttctcgatttctttcctcgcaagaaaagaaacaaaatttccaagaaaattttcagaaatggaagcattgaagatgaagcaattttt |
200 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069150 |
ttgcctaaccacttctctcgatttctttccttgcaagaaaagaaacaaaatttccaagaaaattttcagaaatggaagcattgaagatgaagcaattttt |
10069051 |
T |
|
| Q |
201 |
tgctatggttgtagtggccatgaggatggcagcatcaagtgtttcagctgcagatgcaccagctccaagtccaacatcagatgctactactctctttgtc |
300 |
Q |
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||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069050 |
tgctatgctggtagtggccatgatgatggcagcatcaagtgtttcagctgcagatgcaccagctccaagtccaacatcagatgctactactctctttgtc |
10068951 |
T |
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| Q |
301 |
ccaacaata |
309 |
Q |
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||||||||| |
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| T |
10068950 |
ccaacaata |
10068942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 42 - 305
Target Start/End: Complemental strand, 10106970 - 10106704
Alignment:
| Q |
42 |
caactatataaagtcacatagacatacacttaatattcatccactacctatccttgtctttgcctaaccacttttctcgatttctttcctcgcaagaaaa |
141 |
Q |
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| T |
10106970 |
caactatataaagtcacatagacatacacttaatattcatccactacctatccttgtatttgcctacccattcctctcactttctttcctcaaaagaaaa |
10106871 |
T |
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| Q |
142 |
gaaacaaaatttccaagaaaattttc---agaaatggaagcattgaagatgaagcaattttttgctatggttgtagtggccatgaggatggcagcatcaa |
238 |
Q |
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|||| |||||||||||| |||| ||||||||| |||||||||||||| ||| ||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
10106870 |
gaaagaaaatttccaagttttttttttatagaaatggaggcattgaagatgaatcaaatttttgctatggtggtagtggtcatgatgatggcagcatcaa |
10106771 |
T |
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| Q |
239 |
gtgtttcagctgcagatgcaccagctccaagtccaacatcagatgctactactctctttgtcccaac |
305 |
Q |
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| T |
10106770 |
gtgtttcagctgcagatgcaccagctccaagtcctacatcagatgctactactctctttgttccaac |
10106704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 33252908 - 33252974
Alignment:
| Q |
239 |
gtgtttcagctgcagatgcaccagctccaagtccaacatcagatgctactactctctttgtcccaac |
305 |
Q |
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||||||||||||| ||||||||||||||||||||||| || |||||||| || || ||||| ||||| |
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| T |
33252908 |
gtgtttcagctgctgatgcaccagctccaagtccaacttctgatgctaccacactttttgttccaac |
33252974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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