View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_high_30 (Length: 267)
Name: NF17445_high_30
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 28537125 - 28536900
Alignment:
| Q |
20 |
taatgaacccacgtatctagtcaaactagctaggcccacatattgacttagtaattctttaacaaagatgccaataaattaacatcaaattaaacaatct |
119 |
Q |
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| T |
28537125 |
taatgaacccacgtatctagtcaaactagctaggcccacatattgacttagtaattctttaacaaagatgccaataaattaacatcaaattaaacaatc- |
28537027 |
T |
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| Q |
120 |
acaatcgatggtaacattgccatgcaattagagtttacatctacgtacgtaattaattatcaaagaaaaattaattagcataattaatacacttaatttg |
219 |
Q |
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| T |
28537026 |
------gatggtaacattgccatgcaattagagtttacatctacgtacgtaattaattatcaaagaaaaattaattagca----taatacacttaatttg |
28536937 |
T |
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| Q |
220 |
aaaataactagctagctatcaaactttctcttcctat |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
28536936 |
aaaataactagctagctatcaaactttctcttcctat |
28536900 |
T |
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