View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17445_high_6 (Length: 410)
Name: NF17445_high_6
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 48451737 - 48452133
Alignment:
| Q |
1 |
aactgctcacaaggattcatctctatttgacaatcccgggctcgcatgtctcgctctacagtacattaaggcataccagggtgattgtggtgctgtgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451737 |
aactgctcacaaggattcatctctatttgacaatcccgggctcgcatgtctcgctctgcagtacattaaggcataccagggtgattgtggtgctgtgggt |
48451836 |
T |
|
| Q |
101 |
ggatctgatgccaagaagccccctgaatctcaatttgctgaagcttttgccccaaactgtggtgttaaggcatcaactcttgctcgtataactggtcgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451837 |
ggatctgatgccaagaagccccctgaatctcaatttgctgaagcttttgccccaaactgtggtgttaaggcatcaactcttgctcgtataactggtcgtt |
48451936 |
T |
|
| Q |
201 |
tcttggggtgccagactaagtatgtccatgcacctgaggcgttttctgaaatcctgataagaaacgagaagagcttagacatactctacagtaagaatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451937 |
tcttggggtgccagactaagtatgtccatgcacctgaggcgttttctgaaatcctgataagaaacgagaagagcttagacatactctacagtaagaatca |
48452036 |
T |
|
| Q |
301 |
cactcaggtcggtgctgctgtaaccggtactgatagagggtctccttatttctggtgtgtgttgtttagcaatggcaaacctaacagtacctttgct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48452037 |
cactcaggtcggtgctgctgtaaccggtactgatggagggtctccttatttctggtgtgtgttgtttagcaatggcaaacctaacagcacctttgct |
48452133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University