View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_high_8 (Length: 408)
Name: NF17445_high_8
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 2352547 - 2352916
Alignment:
| Q |
15 |
caaaggcaagaaatcattggacggacatatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
114 |
Q |
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| T |
2352547 |
caaaggcaagaaatcattggac----atatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
2352642 |
T |
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| Q |
115 |
tttctccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352643 |
tttttccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
2352742 |
T |
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| Q |
215 |
tcaattttaatagatacagtgtaggggaccaaatctggttgagaatgtgaatactgtnnnnnnnnnnnnnnccaacactgcttaagtagtaagcaccaag |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2352743 |
tcaattttaatagatacagtgtaggggaccaaatctggttgagaatgtgaatactgt---aaaaaaaaaaaccaacactgcttaagtagtaagcaccaag |
2352839 |
T |
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| Q |
315 |
tgggtttgattatacgttagagtttaaaaaatcttagttgtattgtagataagacaattatgcaggccagggttttt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352840 |
tgggtttgattatacgttagagtttaaaaaatcttagttgtattgtagataagacaattatgcaggccagggttttt |
2352916 |
T |
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