View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_high_9 (Length: 407)
Name: NF17445_high_9
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 44005130 - 44005410
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
100 |
Q |
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| T |
44005130 |
atcctacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
44005229 |
T |
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| Q |
101 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
200 |
Q |
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| T |
44005230 |
ttctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
44005329 |
T |
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| Q |
201 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaatattcaaagta |
281 |
Q |
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| T |
44005330 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaatattcaaagta |
44005410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 44009056 - 44009331
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009056 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
44009155 |
T |
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| Q |
101 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
200 |
Q |
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| T |
44009156 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
44009255 |
T |
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| Q |
201 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaatattcaaagt |
280 |
Q |
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| T |
44009256 |
ttctttgatgccaaatcctttactctatccattacta----aatatatataaaaatatgaatcttgaaaatattcaaagt |
44009331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 44005463 - 44005516
Alignment:
| Q |
335 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatat |
388 |
Q |
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| T |
44005463 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatat |
44005516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 44009386 - 44009426
Alignment:
| Q |
335 |
tacctcttatttatagtggctagtgaggaaagtggattgca |
375 |
Q |
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| T |
44009386 |
tacctcttatttatagtggtttgtgaggaaagtggattgca |
44009426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 39846852 - 39846625
Alignment:
| Q |
6 |
acaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcattgtcta |
105 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||| | | ||||||||||| ||||||||| |||||||| | |||||||| | |
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| T |
39846852 |
acaaattttccaccaatgaacactgctggcactgaagggttacatccaagact---cctcaaagccctttccatttccctaccatagggttcattgtcaa |
39846756 |
T |
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| Q |
106 |
gttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagctttctt |
205 |
Q |
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| |||| || |||||||||||||| || |||||||| | |||| | ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
39846755 |
gctcatgcacagcaggacttgctcctagctcatagaacaattgtgttatgctgtgacacatgtagcatgaactctttgtgaatataactgcagctttctt |
39846656 |
T |
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| Q |
206 |
tgatgccaaatcctttactctatccattact |
236 |
Q |
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||||||||||||||| ||||||||||||||| |
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| T |
39846655 |
tgatgccaaatccttcactctatccattact |
39846625 |
T |
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