View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17445_low_1 (Length: 1006)
Name: NF17445_low_1
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 5717130 - 5717660
Alignment:
| Q |
20 |
atatcttataggttggaacatagtagattatttacaaataaaacagggttacatgttctatatatttgtactgcttatgatgacttgtcttgtcatgatt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717130 |
atatcttataggttggaacatggtagattatttacaaataaaacagggttacttgttctatatatttgtactgcttatgatgacttgtcttgtcatgatt |
5717229 |
T |
|
| Q |
120 |
cagttaataatgacaacaaaaaccaaagctagttctctggtaaaacgtggacaaaagagaaacactcttttctatctttgtattttacacaaaatatnnn |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717230 |
cagttaataatgacaacaaaaaccaaagctagttctctggtaaaacgtggacaaaagagaaacactcttttctatctttgtattttacacaaaatataaa |
5717329 |
T |
|
| Q |
220 |
nnnnngaaaagagactcaccttctattgtttttatatgaatgtgtgtgaccatttaatttatgatttcattgattccttttaggtcatgtgtaccctcat |
319 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717330 |
------aaaagggactcactttctattgtttttatatgaatgtgtgtgaccatttaatttatgatttcattgattccttttaggtcatgtgtaccctcat |
5717423 |
T |
|
| Q |
320 |
gtttttatgtcacttatacagcctaaaacttgctattgctttgctgtttacatttgtgtcccatatttacaaagttgtcactgcaacaacaatgctttta |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717424 |
gtttttatgtcacttatacagcctaaaacttgctattgctttgctgtttacatttgtgtcccatatttacaaagttgtcactgcaacaacaatgctttta |
5717523 |
T |
|
| Q |
420 |
ttgcttctagttgtcatttgttttaaaccttaccttctttccagcaaagcataccccattcgtgcttcatagctattttggcagcaaacacgtgcatcca |
519 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717524 |
ttgattctagttgtcatttgtgttaaaccttaccttctttccagcaaagcataccccattcgtgcttcatagctattttggcagcaaacacgtgcatcca |
5717623 |
T |
|
| Q |
520 |
caatatcattattaccatgttcttcaaacaaaaatca |
556 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5717624 |
caatatcattattaccatgttcttcatacaaaaatca |
5717660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 627 - 993
Target Start/End: Original strand, 5717715 - 5718081
Alignment:
| Q |
627 |
atgtcaactagtatatttagtgtatatttggttctgcggtaataaaagttgattttaattgaatgtaacgtgaatgcgaagtggaaaaacaatagtgaga |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5717715 |
atgtcaactagtatatttagtgtatatttggttctgcggtaataaaagttcattttaattgaacgtaacgtgaatgcgaagtggaaaaacaacagtgaga |
5717814 |
T |
|
| Q |
727 |
ctgtgattttgttgaagctttaaaatgtaacttttattaaaatcgcggtagttcattttgattccatcaatctcactgcaaatccaatcatgacaaatta |
826 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5717815 |
ctgtgattttgttgaagctttaaaatgtaacttttatcaaaatcgcggcagttcattttgattccatcaatctcactacaaatccaatcatgacaaatta |
5717914 |
T |
|
| Q |
827 |
tagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattacttgatattataattttggaatttcacactttat |
926 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717915 |
tagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattacttgatattataattttggaatttcacactttat |
5718014 |
T |
|
| Q |
927 |
gatttgcaggatgcttttactataatgtttttgttttaccttaatttagtgtttctttctacctatg |
993 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5718015 |
gatttgcagcatatttttactataatgtttttgttttaccttaatttagtgtttctttctacctatg |
5718081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 726 - 761
Target Start/End: Complemental strand, 23955569 - 23955534
Alignment:
| Q |
726 |
actgtgattttgttgaagctttaaaatgtaactttt |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23955569 |
actgtgattttgttgaagctttaaaatgtaactttt |
23955534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 730 - 768
Target Start/End: Complemental strand, 13712362 - 13712324
Alignment:
| Q |
730 |
tgattttgttgaagctttaaaatgtaacttttattaaaa |
768 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
13712362 |
tgattttgttgaagctctaaaatgtaacttttatcaaaa |
13712324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University