View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17445_low_12 (Length: 400)

Name: NF17445_low_12
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17445_low_12
NF17445_low_12
[»] chr4 (6 HSPs)
chr4 (19-254)||(55203265-55203500)
chr4 (255-394)||(55203569-55203708)
chr4 (132-203)||(55205844-55205915)
chr4 (100-156)||(10032286-10032342)
chr4 (100-150)||(1856676-1856726)
chr4 (276-328)||(15995475-15995527)
[»] chr2 (3 HSPs)
chr2 (260-382)||(10257972-10258096)
chr2 (255-342)||(33669249-33669338)
chr2 (100-156)||(18259213-18259270)
[»] chr1 (7 HSPs)
chr1 (284-362)||(48990561-48990641)
chr1 (265-362)||(19874187-19874285)
chr1 (294-362)||(25491655-25491725)
chr1 (104-153)||(48990904-48990953)
chr1 (108-153)||(25491998-25492043)
chr1 (104-153)||(48986045-48986094)
chr1 (100-153)||(52433030-52433083)
[»] chr7 (4 HSPs)
chr7 (294-362)||(46168977-46169047)
chr7 (104-153)||(46164460-46164509)
chr7 (129-202)||(46513512-46513583)
chr7 (104-153)||(46169318-46169367)
[»] chr3 (2 HSPs)
chr3 (123-158)||(34374786-34374821)
chr3 (100-158)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (100-153)||(11167-11221)
[»] chr6 (1 HSPs)
chr6 (100-156)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 55203265 - 55203500
Alignment:
Q  19 gttaggggattgaagattgcgacggagaccttcacagaataggattatttcagggagaaggcgaccgtgtga-ttcgtttattgaatgacatgtggaaga 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55203265 gttaggggattgaatattgcgacggagaccttcacagaataggatcatttcagggagaaggcgaccgtgtgaattcgtttattgaatgacatgtggaaga 55203364  T
Q  118 aagggattcaatggttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttcctctttctcaagcg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203365 aagggattcaatggttcagattaaaaataaacaaaacatcagc-ttttttaattaaaaaacaaaatagaggagaaacacgcgcttcctctttctcaagcg 55203463  T
Q  218 tatctcactcatcgccatgcctcctgccggcgccgcc 254  Q
    |||||||||||||||||||||||||||||||||||||    
T  55203464 tatctcactcatcgccatgcctcctgccggcgccgcc 55203500  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 55203569 - 55203708
Alignment:
Q  255 cactgccgctctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcatttacccacttttacccttgccaatttctaaatactca 354  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203569 cactgccgctctcacgtaccaaaccaccattgtttctcttctcttccacaccagacgattcatttacccacttttacccttgccaatttctaaatactca 55203668  T
Q  355 tgacaacaactacaagactgtaaaatataattatgtctct 394  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55203669 tgacaacaactacaagactgtaaaatataattatgtctct 55203708  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 55205915 - 55205844
Alignment:
Q  132 ttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 203  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  55205915 ttcagattaaaaataaacaaaacatcagttttttttaattaaaaaacaaaatagaggagaaacacgcgcttc 55205844  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 10032342 - 10032286
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 156  Q
    |||||||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  10032342 tgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaaacat 10032286  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 1856726 - 1856676
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaaca 150  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  1856726 tgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 15995527 - 15995475
Alignment:
Q  276 aaccaccattgtttctcctctcttccacaccagacgattcatttacccacttt 328  Q
    ||||||| ||| ||||| ||||||||||||||| |  ||||||||||||||||    
T  15995527 aaccaccgttgcttctcttctcttccacaccagtcttttcatttacccacttt 15995475  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 382
Target Start/End: Original strand, 10257972 - 10258096
Alignment:
Q  260 ccgctctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatga 357  Q
    |||| ||||| |||||||||||| ||| | ||| ||||||||| ||||  |||||||||  ||||||||||||||||||||||||||||| || |||| |    
T  10257972 ccgccctcacataccaaaccacctttgctgctcttctcttccaaaccaatcgattcattcttacccacttttacccttgccaatttctaagtattcataa 10258071  T
Q  358 caacaactacaagactgtaaaatat 382  Q
    ||||||||||||||||| |||||||    
T  10258072 caacaactacaagactgcaaaatat 10258096  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 33669338 - 33669249
Alignment:
Q  255 cactgccgctctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcat--ttacccacttttacccttgccaatt 342  Q
    |||||| || ||||| ||||||||| | |||||| ||| ||||||||||||| | ||||||||  |||||||||||||||||| ||||||    
T  33669338 cactgctgccctcacataccaaaccgctattgttgctcttctcttccacaccggtcgattcattcttacccacttttacccttaccaatt 33669249  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 18259270 - 18259213
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcaga-ttaaaaataaacaaaacat 156  Q
    |||||||||||||| | |||  |||||||||||||| | |||||||||||||||||||    
T  18259270 tgaatgacatgtggcaaaaaaagattcaatggttcatatttaaaaataaacaaaacat 18259213  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 48990641 - 48990561
Alignment:
Q  284 ttgtttctcctctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 362  Q
    ||||| ||| ||||||||||||||| ||||||| |  ||||||| |||||||||||||||||||||||| |||||||||||    
T  48990641 ttgttgctcttctcttccacaccagtcgattcactcttacccacatttacccttgccaatttctaaatattcatgacaaca 48990561  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 19874285 - 19874187
Alignment:
Q  265 ctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 362  Q
    ||||| ||| |||||||| ||||| ||  |||||||||||||||  |||||| |  ||||||||||||| |||||||||||||||||| |||||||||||    
T  19874285 ctcacatactaaaccacc-ttgttgctattctcttccacaccagttgattcactcttacccacttttacgcttgccaatttctaaatattcatgacaaca 19874187  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 25491725 - 25491655
Alignment:
Q  294 tctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 362  Q
    ||||||||||||||| ||||||| |  ||||||| |||||||||| ||||||||||||| |||||||||||    
T  25491725 tctcttccacaccagtcgattcactcttacccacatttacccttgtcaatttctaaatattcatgacaaca 25491655  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 48990953 - 48990904
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  48990953 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 48990904  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 25492043 - 25491998
Alignment:
Q  108 atgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||    
T  25492043 atgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 25491998  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 48986045 - 48986094
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  48986045 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 48986094  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 52433030 - 52433083
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    ||||||||| |||| | ||| | |||||||||||||||||||||||||||||||    
T  52433030 tgaatgacacgtggcacaaatgaattcaatggttcagattaaaaataaacaaaa 52433083  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 46169047 - 46168977
Alignment:
Q  294 tctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 362  Q
    ||||||||||||||| ||||||| |  ||||||| |||||||||||||||||||||||| |||||||||||    
T  46169047 tctcttccacaccagtcgattcactcttacccacatttacccttgccaatttctaaatattcatgacaaca 46168977  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 46164460 - 46164509
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  46164460 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 46164509  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 46513583 - 46513512
Alignment:
Q  129 tggttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgctt 202  Q
    ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| |||||||||||    
T  46513583 tggttcagattaaaaataaacaaaacatcagc-ttttttaattaaaaaaaaaaatagaggag-aacacgcgctt 46513512  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 46169367 - 46169318
Alignment:
Q  104 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  46169367 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 46169318  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 34374821 - 34374786
Alignment:
Q  123 attcaatggttcagattaaaaataaacaaaacatca 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374821 attcaatggttcagattaaaaataaacaaaacatca 34374786  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 34374007 - 34374065
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatca 158  Q
    |||||||||||||| | |||  |||||||||||| |||||||||||||| |||||||||    
T  34374007 tgaatgacatgtggcaaaaaatgattcaatggtttagattaaaaataaataaaacatca 34374065  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 11167 - 11221
Alignment:
Q  100 tgaatgacatgtgg-aagaaagggattcaatggttcagattaaaaataaacaaaa 153  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||| |||||    
T  11167 tgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaaa 11221  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 6356433 - 6356377
Alignment:
Q  100 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 156  Q
    |||||||||||||| | |||  |||||||| ||||||||| ||||||| ||||||||    
T  6356433 tgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataatcaaaacat 6356377  T

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