View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17445_low_18 (Length: 350)
Name: NF17445_low_18
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_18 |
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| [»] scaffold0328 (1 HSPs) |
| | |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 15815499 - 15815181
Alignment:
| Q |
20 |
acctacttttgcttaaaatctctagagttgttaacaaataacaacgtacaactcaataaaacagtctagctcagtgcatcaaggagatatatagtgactc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15815499 |
acctacttttgcttaaaatctctagagttgttaacaaataacaacgtacaactcaataaaacagtctagctcagtgcatcaaggagatatatagtgactc |
15815400 |
T |
|
| Q |
120 |
acaaataacaaggacatacacaaccctattaagattgtttattaattacgacttcagtagtcttctcacaggtttggatcttcctttatatagccagaaa |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
15815399 |
acaaataacaaggacatacacaaccctattaagattgtttattaattacgacttcagtagtcttctcgcaggtttgggtcttcctttatagagccagaaa |
15815300 |
T |
|
| Q |
220 |
atgcatgggcttgataattcatcgggctaaacaaatacatctgatccagtagagtcttcagccataatcttcaagaagcacataaagccaaacccttctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15815299 |
atgcatgggcttgataattcatcgggctaaacaaatacatctgatccagtagagtcttcagccataatcttcaagaag--cataaagccaaacccttctt |
15815202 |
T |
|
| Q |
320 |
cctcctcttgttgtatctctg |
340 |
Q |
| |
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|||||||||| |||||||||| |
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|
| T |
15815201 |
cctcctcttgctgtatctctg |
15815181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 30710550 - 30710585
Alignment:
| Q |
305 |
agccaaacccttcttcctcctcttgttgtatctctg |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30710550 |
agccaaacccttcttcctcctcttgttgtatctctg |
30710585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 30718823 - 30718858
Alignment:
| Q |
304 |
aagccaaacccttcttcctcctcttgttgtatctct |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
30718823 |
aagccaaacccttcttcctcctcttgttgtatctct |
30718858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 30689780 - 30689816
Alignment:
| Q |
304 |
aagccaaacccttcttcctcctcttgttgtatctctg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
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| T |
30689780 |
aagccaaacccttcttcctcctcttgttgtgtctctg |
30689816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 30698667 - 30698702
Alignment:
| Q |
305 |
agccaaacccttcttcctcctcttgttgtatctctg |
340 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
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|
| T |
30698667 |
agccaaactcttcttcctcctcttgttgtatctctg |
30698702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 3836 - 3548
Alignment:
| Q |
16 |
caaaacctacttttgcttaaaatctctagagttgttaacaaataacaacgtacaactcaa-taaaacagtctagctcagtgcatcaag--gagatatata |
112 |
Q |
| |
|
||||||||| | |||||||||| ||||||| | ||| |||||||||||| | |||||||| ||||| |||| |||||||||||||| | || | | | | |
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|
| T |
3836 |
caaaacctaatcttgcttaaaaactctagattggttcacaaataacaacttccaactcaactaaaatagtccagctcagtgcatcatggtgacacaaaga |
3737 |
T |
|
| Q |
113 |
gtgactcacaaataacaaggacatacac--aaccctattaagattgttt-attaattacgacttcagtagtcttctcacaggtttggatcttcctttata |
209 |
Q |
| |
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||| |||||||||||||||||| |||| ||||||| ||||||| ||| | ||| ||||||||||| |||||| | ||||||| |||||||||| |
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| T |
3736 |
gtggatcacaaataacaaggacaaacacaaaaccctaataagattctttcctcaatgacgacttcagtggtcttcacgtaggtttgagggttcctttata |
3637 |
T |
|
| Q |
210 |
tagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctgatccagtagagtcttcagccataatcttcaagaagca |
299 |
Q |
| |
|
|| ||||| || |||| || ||||| || ||||||||||| ||| | | |||||||| | |||||| ||| | ||||||| ||||||| |
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|
| T |
3636 |
tatccagagaaggcataggtttgatcatcaatcgggctaaa-aaaaatagctgatccaaaaaagtcttaagctacaatcttctagaagca |
3548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 27931840 - 27931740
Alignment:
| Q |
198 |
tcttcctttatatagccagaaaatgcatgggcttgataattca-tcgggctaaacaaatacatctgatccagtagagtcttcagccataatcttcaagaa |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | |||| ||||||||||| |||||| |||||||| ||||||||||| | | ||||||| |||| |
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|
| T |
27931840 |
tcttcctttatatagccagagaatgcatgggcttg-ttcttcactcgggctaaac-aatacagctgatccaatagagtcttcaactacaatcttctagaa |
27931743 |
T |
|
| Q |
297 |
gca |
299 |
Q |
| |
|
||| |
|
|
| T |
27931742 |
gca |
27931740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 22884915 - 22884799
Alignment:
| Q |
163 |
aattacgacttcagtagtcttctcacaggtttggatcttcctttatatagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctg |
262 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||||||||| |||| | |||||||||||||| || ||||||||||| |||||| || |
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| T |
22884915 |
aattgcgacttcagtagtcttcttt-aggtttgagtcttcctttatatagacagagagtgcatgggcttgatcatctgtcgggctaaac-aatacagttg |
22884818 |
T |
|
| Q |
263 |
atccagtagagtcttcagc |
281 |
Q |
| |
|
||||| ||| ||||||||| |
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|
| T |
22884817 |
atccaatagtgtcttcagc |
22884799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 22902873 - 22902757
Alignment:
| Q |
163 |
aattacgacttcagtagtcttctcacaggtttggatcttcctttatatagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctg |
262 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||| |||| | |||||| ||||||| || ||||||||||| |||||| || |
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|
| T |
22902873 |
aattacgacttcagtagtcttcttt-aggtttgagtcttcctttatatagacagagagtgcatgtgcttgatcatctgtcgggctaaac-aatacagttg |
22902776 |
T |
|
| Q |
263 |
atccagtagagtcttcagc |
281 |
Q |
| |
|
||||| ||| ||||||||| |
|
|
| T |
22902775 |
atccaatagtgtcttcagc |
22902757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 6442019 - 6442120
Alignment:
| Q |
41 |
ctagagttgttaacaaataacaacg-tacaactcaataaaacagtctagctcagtgcatcaaggagatatatagtga--ctcacaaataacaaggacata |
137 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||||| |||||||| |||||| |||||||||| |||| | || || ||||||||||||||||||||| |
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|
| T |
6442019 |
ctagagtggtttacaaataacaataatataactcaactaaacagtccagctcaatgcatcaaggtgatacaaagagaaactcacaaataacaaggacata |
6442118 |
T |
|
| Q |
138 |
ca |
139 |
Q |
| |
|
|| |
|
|
| T |
6442119 |
ca |
6442120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 10290910 - 10290955
Alignment:
| Q |
189 |
aggtttggatcttcctttatatagccagaaaatgcatgggcttgat |
234 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
10290910 |
aggtttgagtcttcctttatatagtcagagaatgcatgggcttgat |
10290955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 18386172 - 18386221
Alignment:
| Q |
81 |
cagtctagctcagtgcatcaaggagatatatagtgactcacaaataacaa |
130 |
Q |
| |
|
||||| |||||| |||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
18386172 |
cagtccagctcaatgcatcaaggtgataaatagtggctcacaaataacaa |
18386221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 8432 - 8316
Alignment:
| Q |
163 |
aattacgacttcagtagtcttctcacaggtttggatcttcctttatatagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctg |
262 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||||||||| |||| | |||||| ||||||| || ||||||||||| |||||| || |
|
|
| T |
8432 |
aattgcgacttcagtagtcttcttt-aggtttgagtcttcctttatatagacagagagtgcatgagcttgatcatctgtcgggctaaac-aatacagttg |
8335 |
T |
|
| Q |
263 |
atccagtagagtcttcagc |
281 |
Q |
| |
|
||||| ||| ||||||||| |
|
|
| T |
8334 |
atccaatagtgtcttcagc |
8316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 2154393 - 2154357
Alignment:
| Q |
198 |
tcttcctttatatagccagaaaatgcatgggcttgat |
234 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2154393 |
tcttcctttatatagctagagaatgcatgggcttgat |
2154357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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