View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_19 (Length: 350)
Name: NF17445_low_19
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 6700137 - 6699815
Alignment:
| Q |
20 |
tatatctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtacatattgcttacagtttattttctgtcataat |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
6700137 |
tatatctctttgaatggagcaagttgaagttaattccttcaaaagagaggtaagttataccacatgtacatattgcttacactttatattctgttataat |
6700038 |
T |
|
| Q |
120 |
atttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaatctaaaac-agtagaaagatttagagttgaatttt |
218 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6700037 |
attgggatgactgatatttatcaatgcaaattaggtgcataattgcaagccttcattcattctaatctaaaaccagtagaaagatttagagttgaatttt |
6699938 |
T |
|
| Q |
219 |
gtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaataaattggtgttgaataggacatttgagtaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6699937 |
gtttatcatttgtcaaggacactataccaaatatacatcgaaacaaagtatgctacataaattcactaataaattggtgctgaataggacatttgagtaa |
6699838 |
T |
|
| Q |
319 |
ctaaatcctccaccaattcatct |
341 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6699837 |
ctaaatcctccaccaattcatct |
6699815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 20913810 - 20914132
Alignment:
| Q |
20 |
tatatctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtacatattgcttacagtttattttctgtcataat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||| || |
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| T |
20913810 |
tatatctctttgaatggagcaagttgaagttaattccttcaaaagagaggtaagttttacgacatgtacatattgcttacactttatcttctgtcatcat |
20913909 |
T |
|
| Q |
120 |
atttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaatctaaaac-agtagaaagatttagagttgaatttt |
218 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
20913910 |
attgggatgactgatatttatcaatgcaaattaggtgcataattgtaatccttcgttcattctaatataaaaccagtagaaagatttagagttgaatttt |
20914009 |
T |
|
| Q |
219 |
gtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaataaattggtgttgaataggacatttgagtaa |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20914010 |
gtttatcatttgtcaaggacactataccaaatatacatcgaaacgaagtatgctacataaattcactaataaattggtgctgaataggacatttgagtaa |
20914109 |
T |
|
| Q |
319 |
ctaaatcctccaccaattcatct |
341 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
20914110 |
ctaaatcctccaccaattcatct |
20914132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 21137695 - 21137756
Alignment:
| Q |
253 |
acatcgaaataaagtatgctacataaattcactaataaattggtgttgaataggacatttga |
314 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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|
| T |
21137695 |
acatcgaaacaaagtatgctacataaattcattaataaattggaactgaataagacatttga |
21137756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 295
Target Start/End: Complemental strand, 2303878 - 2303734
Alignment:
| Q |
151 |
taggtgcataattgtaatccttcattcattctaatctaaaac-agtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaa |
249 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||||| ||||| ||| ||||||||| |
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| T |
2303878 |
taggtgcataattgcaatccttcattcattctaatctaaaaccagca-aaagatttagagtcgaattctgtttatcatttttcaagtacattataccaaa |
2303780 |
T |
|
| Q |
250 |
tatacatcgaaataaagtatgctacataaattcactaataaattgg |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
2303779 |
tatacatcgaaacaaagtatgctacataaattcactaataaattgg |
2303734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 25534003 - 25533843
Alignment:
| Q |
25 |
ctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtacatattgcttacagtttattttctgtcataatatttg |
124 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||| || | ||||||| | ||| ||||||||||||||| | |
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| T |
25534003 |
ctctttgaatggagcaagttgaagttaattccttccaaagagaggtaaattataccacgtgttcagaatgcttaccctctatcttctgtcataatattgg |
25533904 |
T |
|
| Q |
125 |
gataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaat |
185 |
Q |
| |
|
||| ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
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|
| T |
25533903 |
gatgactgatatttaccaatgcaaattaagcccataattgcaatccttcattcattctaat |
25533843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 25533091 - 25532990
Alignment:
| Q |
195 |
tagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaataaattg |
294 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
25533091 |
tagaaagatttgaagtttaattttgtttatcatttgtcaaggacactataccaaagatacatcgaaacaaagtatgctacataaattcactaataaaatg |
25532992 |
T |
|
| Q |
295 |
gt |
296 |
Q |
| |
|
|| |
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|
| T |
25532991 |
gt |
25532990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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