View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_2 (Length: 636)
Name: NF17445_low_2
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 8277819 - 8277201
Alignment:
| Q |
1 |
tcagttcatcgacgaaaatggtcgttttagcagttaaattgtaagcaatgttttaaaaatcaaaccggcatcaggtcaaggttcaactacttaaaatcag |
100 |
Q |
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| T |
8277819 |
tcagttcatcgacgaaaatggtcgttttagcagttaaattgtaagcaatgttttaaaaatcaaaccggcatcaggtcaatgttcaactacttaaaatcag |
8277720 |
T |
|
| Q |
101 |
aacaaaatcacgattgaaccgctaaaataacctaagtgaagaaagtgtggttcacggttcaaccaattgaacttttcgattaaatttttaaaacattggt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277719 |
aacaaaatcacgattgaacagctaaaataacctaagtgaagaaagtgtggttcacggttcaaccaattgaacttttcgattaaatttttaaaacattggt |
8277620 |
T |
|
| Q |
201 |
ttgtaaggtatagtttagttacctaagacagcacttgttcttctcatcttcttcccaactggcagctatacaatcagaatcggctttcaaactagcatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277619 |
ttgtaaggtatagtttagttacctaagacagcacttgttcttctcatcttcttcccaactggcagctatacaatcagaatcggctttcaaactagcatta |
8277520 |
T |
|
| Q |
301 |
tgtctcaaacttttcgatatttccttttcctcctcttcacttgagctccaatttggtgcaaccaaatcatactttgtcgttccaaattgcagtttagaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277519 |
tgtctcaaacttttcgatatttccttttcctcctcttcacttgagctccaatttggtgcaaccaaatcatactttgtcgttccaaattgcagtttagaaa |
8277420 |
T |
|
| Q |
401 |
aatgacactcttctagctgaatagcatcaacactgcatccattgctgtcaatgttagataatgccaatggtcctgacctactagcaggagtgttatggcg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277419 |
aatgacactcttctagctgaatagcatcaacactgcatccattgctgtcaatgttagataatgccaatggtcctgacctactagcaggagtgttatggcg |
8277320 |
T |
|
| Q |
501 |
cgcaggcgatgaactcttgaatggtgtgtgacatcttgaagttgtggaacttcccaatggagtcatttctgtgccaacatctttgtgtttaacttcatga |
600 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277319 |
cgcaggcgatgaactcttgaatggtgtgtgacatcttgaagttgtggaacttcctaatggagtcatttctgtgccaacatctttgtgtttaacttcatga |
8277220 |
T |
|
| Q |
601 |
atcacttctgtgtaagatt |
619 |
Q |
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||||||||||||||||||| |
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| T |
8277219 |
atcacttctgtgtaagatt |
8277201 |
T |
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