View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_21 (Length: 340)
Name: NF17445_low_21
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 72 - 325
Target Start/End: Complemental strand, 803586 - 803320
Alignment:
| Q |
72 |
cacgtgcctgtatattgctcaggtcaggtttaattaacaaaatccaacatatgatatggtcaggctaagtagaaaaa-------------cagcaacatt |
158 |
Q |
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| T |
803586 |
cacgtgcctgtatattgctcaggtcaggtttaattaacaaaatccaacatatgatatggtcaggctaagtagaaaaagagctaagaaaaacagcaacatt |
803487 |
T |
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| Q |
159 |
ttccaatattggaactcttcaccacacacccttttccttcaataaattcaacaatagctataaaaggaataaaaaattcaacgcataatatatgccataa |
258 |
Q |
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| T |
803486 |
ttccaatattggaactcttcaccacacacccttttccttcaataaattcaacaatagctataaaaggaataaaaaattcaacgcataatatatgccataa |
803387 |
T |
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| Q |
259 |
acaaacaaccagattttccccaaaaataaaatatacacacactatctggggattttcaagcatgaaa |
325 |
Q |
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| T |
803386 |
acaaacaaccagattttccccaaaaataaaatatacacacactatctggggattttcaagcatgaaa |
803320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 1027640 - 1027513
Alignment:
| Q |
21 |
aattttaaagaaatgcatatcccagtgtagatgcacgtgccctctgcctctcacgtgcctgtatattgctcaggtcaggtttaattaacaaaatccaaca |
120 |
Q |
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| T |
1027640 |
aattttaaagaaatgcatagaccaatgtggatgcacgtgccctctgcctctcacgtgcctgaatattgctcaggtcagatttaattaacaaaatcaaaca |
1027541 |
T |
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| Q |
121 |
tatgatatggtcaggctaagtagaaaaa |
148 |
Q |
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| T |
1027540 |
tacgatatggtcagactaagtggaaaaa |
1027513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 803619 - 803579
Alignment:
| Q |
21 |
aattttaaagaaatgcatatcccagtgtagatgcacgtgcc |
61 |
Q |
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| T |
803619 |
aattttaaagaaatgcatatcccagtgtagatgcacgtgcc |
803579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 1027506 - 1027441
Alignment:
| Q |
142 |
agaaaaacagcaacattttccaatatt----------ggaactcttcaccacacacccttttcctt |
197 |
Q |
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| T |
1027506 |
agaaaaacagcaacattttccaatattccctctcattggaactcttcaccacacacccttttcctt |
1027441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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