View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_22 (Length: 339)
Name: NF17445_low_22
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 323
Target Start/End: Complemental strand, 1966816 - 1966493
Alignment:
| Q |
2 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagctaatttgattcacacaaa |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1966816 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagttaatttgattcacacaaa |
1966717 |
T |
|
| Q |
102 |
tgagaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcatggaaccaatattatctaactgaattat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1966716 |
tgagaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcattgaaccaatattatctaactgaattat |
1966617 |
T |
|
| Q |
202 |
gagtaactaatttagtggcataaaaatgggctagagaaa--tgagattgaaacaacaagcagtggcactcagtagaaaattagaccaacatgcatcataa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1966616 |
gagtaactaatttagtggcataaaaatgggctagagaaatgtgaggttgaaacaacaagcagtggcacttagtagaaaattagaccaacatgcatcataa |
1966517 |
T |
|
| Q |
300 |
aattctcacatgtaagtgcatttt |
323 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
1966516 |
aattctcacatgtaagtacatttt |
1966493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 323
Target Start/End: Original strand, 8991056 - 8991379
Alignment:
| Q |
2 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagctaatttgattcacacaaa |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
8991056 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactaataaacaacacatagctattcaaatagagtaagttaatttgattcacacaaa |
8991155 |
T |
|
| Q |
102 |
tgagaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcatggaaccaatattatctaactgaattat |
201 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8991156 |
tgagaactatcagcgtctaccatgctctaaaacaaaaatcacatgataaatccataaactagtaaaatctcattgaaccaatattatctaactgaattat |
8991255 |
T |
|
| Q |
202 |
gagtaactaatttagtggcataaaaatgggctagagaaa--tgagattgaaacaacaagcagtggcactcagtagaaaattagaccaacatgcatcataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8991256 |
gagtaactaatttagtggcataaaaatgggctagagaaatgtgagattgaaacaacaagcagtggcacttagtagaaaattagaccaacatgcatcataa |
8991355 |
T |
|
| Q |
300 |
aattctcacatgtaagtgcatttt |
323 |
Q |
| |
|
||||||||||||||||| |||||| |
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|
| T |
8991356 |
aattctcacatgtaagtacatttt |
8991379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 104 - 313
Target Start/End: Complemental strand, 31181537 - 31181326
Alignment:
| Q |
104 |
agaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcatggaaccaatattatctaactgaattatga |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
31181537 |
agaaccatcagtgtctaccatgctctaaaacaaaaaccacatgataagtccataaactagtaaaatctcattgaaccaatattatctaacagaattataa |
31181438 |
T |
|
| Q |
204 |
gtaactaatttagtggcataaaaatgggctagagaaa--tgagattgaaacaacaagcagtggcactcagtagaaaattagaccaacatgcatcataaaa |
301 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
31181437 |
gtaactactttagtggcatgaaaatgggctagagaaatgtgagattgaaacaacaagcagtagcacgtagtagaaaattagaccaacatgcatcataaaa |
31181338 |
T |
|
| Q |
302 |
ttctcacatgta |
313 |
Q |
| |
|
|||||||||||| |
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|
| T |
31181337 |
ttctcacatgta |
31181326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 31181674 - 31181558
Alignment:
| Q |
2 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagctaatttgattcacacaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
31181674 |
gagatgaaattatgctattgtttt-ctttatggacacaacaagcattgataaacaacacgtaactattcaaatggagaaagttaatttgattcacacaaa |
31181576 |
T |
|
| Q |
102 |
tgagaactatcagtgtct |
119 |
Q |
| |
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| ||||| |||||||||| |
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| T |
31181575 |
taagaaccatcagtgtct |
31181558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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