View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17445_low_23 (Length: 335)
Name: NF17445_low_23
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 36331253 - 36331558
Alignment:
| Q |
18 |
attttcaggttcacttcaactactatccaaaactaacactatatgtcacttgatcatagcttaagcactaaaacgtatgaaatactttgacaccgaatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36331253 |
attttcaggttcacttcaactactatccaaaactaacactatatgtcacttgatcatagcttaagcactaaaacgtatgaaatactttgacaccgaatgt |
36331352 |
T |
|
| Q |
118 |
ggcattaaccctggcagtcgataatagtaataatttgnnnnnnntgaattaatttatatagttaatatacacactttcatctgaaatctcgatgagtaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36331353 |
ggcattaaccctggcagtcgataatagtaataatttgaaaaaa-tgaattaatttatatagttaatatacacactttcatctgaaatctcgatgagtaaa |
36331451 |
T |
|
| Q |
218 |
aacacttaagtttgatatttggacaacgagtaaaaacacttaagttttatcagcaaaaacgcgtaaaattaatcatgctaacatcataaaattgttgcac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
36331452 |
aacacttaagtttgatatttggacaacgagtaaaaacacttaagttttatcagcaaaaacgcgtaaaattactcatgctaacatcgtaaaattgttgcac |
36331551 |
T |
|
| Q |
318 |
aggttct |
324 |
Q |
| |
|
||||||| |
|
|
| T |
36331552 |
aggttct |
36331558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University