View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_25 (Length: 322)
Name: NF17445_low_25
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 5967369 - 5967668
Alignment:
| Q |
8 |
gagaagaatttaaggttgtataattcaattttgtttttattcatattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgt |
107 |
Q |
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| T |
5967369 |
gagaagaatttaaggttgtataattcaattttgtttttgttcatattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgt |
5967468 |
T |
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| Q |
108 |
ccttgaaggatggtttggtgtccattggtggacagggcgtacatttgttattaccttcgcaacatttgctgtggttgcacctttggtcagctttaagcgg |
207 |
Q |
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| T |
5967469 |
ccttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttattaccttcgcaacatttgttgtggttgcacctttggtcagctttaagcgg |
5967568 |
T |
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| Q |
208 |
attggtgagtgatatttcttttcttgtattaattggtttgcatatagaaacatatagttgtgtcatttaccgaaacggctatagattagacgaccatgtt |
307 |
Q |
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| T |
5967569 |
attggtgagtgatatttcttttcttgtattaattggtttgcatatagaaacatatagttgtgtcatttaccgaaatggctatagattagatgaccatgtt |
5967668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 5933350 - 5933558
Alignment:
| Q |
11 |
aagaatttaaggttgtataattcaattttgtttttattcatattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtcct |
110 |
Q |
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| T |
5933350 |
aagaacttaaggttgtataattctattttgttttg-ttcgtattgtaggtgatgtggtttctggaacaacttcaagtggaattcaccattctggtatcct |
5933448 |
T |
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| Q |
111 |
tgaaggatggtttggtgtccattggtggacagggcgtacatttgttattaccttcgcaacatttgctgtggttgcacctttggtcagctttaagcggatt |
210 |
Q |
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| T |
5933449 |
cgaaggatggtttggagtccattggtggactgggcgtacatttgttcttacctttacaacacttgctgtgtttgcacctctggtcagctttaagcaaatt |
5933548 |
T |
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| Q |
211 |
ggtgagtgat |
220 |
Q |
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|||||||||| |
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| T |
5933549 |
ggtgagtgat |
5933558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 245
Target Start/End: Original strand, 5983333 - 5983525
Alignment:
| Q |
53 |
ttgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtccttgaaggatggtttggtgtccattggtggacagggcgtacatt |
152 |
Q |
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| T |
5983333 |
ttgtaggcgatgtcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatt |
5983432 |
T |
|
| Q |
153 |
tgttattaccttcgcaacatttgctgtggttgcacctttggtcagctttaagcggattggtgagtgatatttcttttcttgtattaattggtt |
245 |
Q |
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| T |
5983433 |
tgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagctttaagcggattggttagtgattttgcttttcttgtattaattggtt |
5983525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 5961966 - 5962133
Alignment:
| Q |
51 |
tattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtccttgaaggatggtttggtgtccattggtggacagggcgtaca |
150 |
Q |
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| T |
5961966 |
tattgtaggtgatgtgatttctggaacgacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtgtccattggtggactgggcgcaca |
5962065 |
T |
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| Q |
151 |
tttgttattaccttcgcaacatttgctgtggttgcacctttggtcagctttaagcggattggtgagtg |
218 |
Q |
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| T |
5962066 |
tttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcgaattggtgagtg |
5962133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 8716498 - 8716428
Alignment:
| Q |
237 |
taattggtttgcatatagaaacatatagttgtgtcatttaccgaaacggctatagattagacgaccatgtt |
307 |
Q |
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| T |
8716498 |
taattgatttgcatatagaaacatatagttgtgtcatttaccgaaacgtctatagattagacgacaatgtt |
8716428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 11044030 - 11044173
Alignment:
| Q |
11 |
aagaatttaaggttgtataattcaattttgtttttattcatattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtcct |
110 |
Q |
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| T |
11044030 |
aagaacttaagtctgtataattcaatttg--ttttatttgtattataggtgatgtgattactagaacaactgcaaatagaattcaccattctgatatctt |
11044127 |
T |
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| Q |
111 |
tgaaggatggtttggtgtccattggtggacagggcgtacatttgtt |
156 |
Q |
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|||||| | || |||||| ||||| ||||| |||| |||||||||| |
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| T |
11044128 |
tgaagggttgtctggtgttcattgttggactgggcatacatttgtt |
11044173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 55925157 - 55925070
Alignment:
| Q |
47 |
ttcatattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtccttgaaggatggtttggtgtccattggtggac |
140 |
Q |
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| T |
55925157 |
ttcatattataggtgatgtgacttctt-aacaacatcaagtggaattcacc-----ggtatccttgaaggatggtttggtattcattggtggac |
55925070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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