View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17445_low_28 (Length: 308)

Name: NF17445_low_28
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17445_low_28
NF17445_low_28
[»] chr1 (6 HSPs)
chr1 (14-148)||(45684720-45684854)
chr1 (149-240)||(20186849-20186940)
chr1 (149-240)||(30339636-30339727)
chr1 (149-240)||(51787272-51787363)
chr1 (155-237)||(9672981-9673062)
chr1 (149-240)||(43740415-43740506)
[»] chr7 (9 HSPs)
chr7 (149-240)||(48057707-48057798)
chr7 (149-240)||(496683-496774)
chr7 (149-240)||(11765707-11765798)
chr7 (149-240)||(2286458-2286549)
chr7 (149-240)||(42535222-42535313)
chr7 (149-239)||(25185942-25186032)
chr7 (156-240)||(23844642-23844726)
chr7 (153-240)||(7527272-7527359)
chr7 (149-240)||(31427268-31427361)
[»] chr3 (6 HSPs)
chr3 (153-240)||(49786397-49786484)
chr3 (148-240)||(8436904-8436996)
chr3 (149-240)||(47940826-47940917)
chr3 (149-240)||(8152977-8153070)
chr3 (149-233)||(29836784-29836868)
chr3 (155-239)||(48778982-48779066)
[»] chr2 (2 HSPs)
chr2 (149-240)||(13922185-13922276)
chr2 (152-240)||(11828960-11829048)
[»] chr5 (5 HSPs)
chr5 (150-240)||(38280281-38280371)
chr5 (149-240)||(25955968-25956059)
chr5 (149-240)||(42250116-42250207)
chr5 (149-240)||(1501377-1501468)
chr5 (149-231)||(7886355-7886437)
[»] chr4 (2 HSPs)
chr4 (149-240)||(52055156-52055247)
chr4 (149-240)||(1158263-1158354)
[»] chr8 (2 HSPs)
chr8 (149-240)||(4076952-4077043)
chr8 (154-240)||(3780367-3780453)
[»] chr6 (1 HSPs)
chr6 (149-240)||(33594527-33594618)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 45684720 - 45684854
Alignment:
Q  14 aggaaataaggtgttacagtacagctcagagttgaatctattgttttctttgacagaaagctgaagttagttagacagttaattcccagctatagtagtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45684720 aggaaataaggtgttacagtacagctcagagttgaatctattgttttctttgacagaaagctgaagttagttagacagttaattcccagctatattagtt 45684819  T
Q  114 agtgtctgatatattctcgatagctagttaagtgg 148  Q
    |||||||||||||||||||||||||||||||||||    
T  45684820 agtgtctgatatattctcgatagctagttaagtgg 45684854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 20186940 - 20186849
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttg 20186849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 30339636 - 30339727
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttg 30339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 51787272 - 51787363
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttg 51787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 9673062 - 9672981
Alignment:
Q  155 tgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacact 237  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacact 9672981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 43740506 - 43740415
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||||| |||| ||| |||||| |  ||| ||||||||||| |||||| |||||||||| | ||| |||| ||| |||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttg 43740415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 48057798 - 48057707
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 48057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 496683 - 496774
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttg 496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 11765707 - 11765798
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  11765707 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttg 11765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 2286458 - 2286549
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||| |||||||||| ||||| || |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||    
T  2286458 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 2286549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 42535313 - 42535222
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttg 42535222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 25186032 - 25185942
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacacttt 239  Q
    |||||||||| |||| |||| |||||||| ||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| |||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatacttt 25185942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 23844642 - 23844726
Alignment:
Q  156 gatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||| ||| ||||||||  |||||||||| |||  ||||||||||||||||||| ||| |||||||| |||||||||||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttg 23844726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 7527359 - 7527272
Alignment:
Q  153 ggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||| | |  ||| |||||||||||||||||||| |||||| |||||||||||| ||| ||||||| ||| ||||||||||    
T  7527359 ggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttg 7527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 31427361 - 31427268
Alignment:
Q  149 gagtggtgatacatgtacacccataggtg--gcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||| ||| |||||||||  ||||||| | |||||| ||| |||||| |||||||| |||   ||||| ||||||||||||||    
T  31427361 gagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttg 31427268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 49786397 - 49786484
Alignment:
Q  153 ggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttg 49786484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 8436996 - 8436904
Alignment:
Q  148 ggagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| || ||||||| || ||||||||||| ||||||||||||||||||||    
T  8436996 ggagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttg 8436904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 47940826 - 47940917
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||| |||||||||| ||||| || |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||    
T  47940826 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 47940917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 8152977 - 8153070
Alignment:
Q  149 gagtggtgatacatgt--acacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||||||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttg 8153070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 29836868 - 29836784
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaa 233  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||| |||| |||  || |||| ||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa 29836784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 48779066 - 48778982
Alignment:
Q  155 tgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacacttt 239  Q
    ||||||||| ||||| ||||||||||||| || |||||| |||||||||| |||||||| |||  |||||| ||| |||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacacttt 48778982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 13922185 - 13922276
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttg 13922276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 11828960 - 11829048
Alignment:
Q  152 tggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||| ||||| |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttg 11829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 38280371 - 38280281
Alignment:
Q  150 agtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttg 38280281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 25956059 - 25955968
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 25955968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 42250116 - 42250207
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||| |||||||||  || |||| |||||||||| |||||| |||||||||||| ||| | ||||||||||||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttg 42250207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 1501468 - 1501377
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||| | | ||||||||| ||||||||||||||| ||||||||||||| ||||| ||  ||||||||||| | ||||||||    
T  1501468 gagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttg 1501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 7886355 - 7886437
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccaca 231  Q
    |||||||||| |||| | ||  ||||||| ||||||||||||||| |||||| |||||||||||| ||| |||| | ||||||    
T  7886355 gagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccaca 7886437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 52055247 - 52055156
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||||||||||||| |||  |||||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttg 52055156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 1158354 - 1158263
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||| ||||||||| ||| | ||||  ||| ||||||||||||| |||||| |||||||||||| ||| ||||||||| ||||||| ||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttg 1158263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 4077043 - 4076952
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||| ||  ||||||||||||||||| ||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttg 4076952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 3780453 - 3780367
Alignment:
Q  154 gtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||| ||  |||| |||| | ||||||||||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttg 3780367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 33594618 - 33594527
Alignment:
Q  149 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 240  Q
    |||| |||||||||| ||| |||| |||||||||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttg 33594527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University