View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_3 (Length: 595)
Name: NF17445_low_3
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 145 - 594
Target Start/End: Original strand, 49009180 - 49009599
Alignment:
| Q |
145 |
gttaatctccaaatcatagaaaaactcaccaacattacattgttttaaatgtaactcgactttggttgcttaggcaaagtctcatgttcaaacagtataa |
244 |
Q |
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| T |
49009180 |
gttaatctccaaatcatagaaaaactcaccaacattacattgttttaaatgtaactcgactttggttgcttaggcaaagtctcatgttcaaacagtataa |
49009279 |
T |
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| Q |
245 |
agttaaaaaatacagttggaggggagacagacaccnnnnnnnncgacgagccaaattcatgataaataaacaaaatagcaaaatttccttccatatccat |
344 |
Q |
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| T |
49009280 |
atttaaaaaatacagttggagggcataaaaa-----------acgacgagccaaattcatcataaataaacaaaatagcaaaatttccttccatatccat |
49009368 |
T |
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| Q |
345 |
ttgaatatcttagctttacttatgataattacaccctcttgttgtcattgagcatcttggagatcctcatagtgattacaaccttcttcaactctctttt |
444 |
Q |
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| T |
49009369 |
ttgaatatcttagctttacttatgataattacaccctcttgttgtcattgagcatcttggagatcctcatagtgattacaaccttcttcaactctctttt |
49009468 |
T |
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| Q |
445 |
ggcatcattagatatttctcaatataatggtgtaactgatcccaccaagaaagaaaagccagaaagagagaaaacatgatttgctaaatggcatgcacaa |
544 |
Q |
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| T |
49009469 |
ggcatcattagatatttctcaatataatg-------------------gaaagaaaagccagaaagagagaaatcatgatttgctaaatgacatgcacaa |
49009549 |
T |
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| Q |
545 |
caattttcttctctacatatacagaaatagatgtcccttgttaaacatat |
594 |
Q |
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| T |
49009550 |
caattttcttctctacatatacagaaatagatgtcccttgttaaacatat |
49009599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49009075 - 49009121
Alignment:
| Q |
1 |
cttgatttcatttttctcaattcatgaccagatcattacttgatatt |
47 |
Q |
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| T |
49009075 |
cttgatttcatttttctcaattcatgaccagatcattacttgatatt |
49009121 |
T |
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