View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_30 (Length: 294)
Name: NF17445_low_30
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_30 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1966801 - 1967087
Alignment:
| Q |
1 |
agcataatttcatctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattgatacttttgtatagagtttggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1966801 |
agcataatttcatctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattaatacttttgtatagagtttggaa |
1966900 |
T |
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| Q |
101 |
gagtgatcaaaatatagacggtagatataattggtttgatttatcaaaattgaaatatatagccaatatattttcaaaggttgatagttatcgcttgtgt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |
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| T |
1966901 |
tagtgatcaaaatatagacggtagataaaattggtttgatttatcaaaattgaaatatataaccaatgtatttttaaaggttgatagttatcgcttgtgt |
1967000 |
T |
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| Q |
201 |
ttatggtgtattcctgtgcaactcttttgtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtctctg |
287 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
1967001 |
ttatggtgtattcctgtgcaactcatttgtagttgagaaatatatatgctaccatgtttttagatgttgcgacaatgatagtttctg |
1967087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 8991071 - 8990785
Alignment:
| Q |
1 |
agcataatttcatctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattgatacttttgtatagagtttggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
8991071 |
agcataatttcatctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcagtgactttaatattaatacttttgtatagagtttggaa |
8990972 |
T |
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| Q |
101 |
gagtgatcaaaatatagacggtagatataattggtttgatttatcaaaattgaaatatatagccaatatattttcaaaggttgatagttatcgcttgtgt |
200 |
Q |
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| T |
8990971 |
tagtgatcaaaatatagacggtagataaaattggtttgatttatcaaaattgaaatatatagtcaatgtattttcaaaggttgatagttatcgcttgtgt |
8990872 |
T |
|
| Q |
201 |
ttatggtgtattcctgtgcaactcttttgtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtctctg |
287 |
Q |
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||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8990871 |
ttatggtgtattcttgagcaactcatttgtagttgagaaatacatatgctaccatgtttttagatgttgtgacaatgatactctctg |
8990785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 129 - 287
Target Start/End: Complemental strand, 6951749 - 6951591
Alignment:
| Q |
129 |
aattggtttgatttatcaaaattgaaatatatagccaatatattttcaaaggttgatagttatcgcttgtgtttatggtgtattcctgtgcaactctttt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6951749 |
aattggtttgatttatcaaaattgaaatatatagccaatgtattttcaaaggttgatagttatcgcttgtgtttatggtgtattcctgtgcaactcattt |
6951650 |
T |
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| Q |
229 |
gtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtctctg |
287 |
Q |
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| T |
6951649 |
gtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtttctg |
6951591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 6951810 - 6951768
Alignment:
| Q |
240 |
atatatatgctaccatgtttttagatgttgtgacaatgatagt |
282 |
Q |
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| T |
6951810 |
atatatatgctaccatgtttttagatgatgtgacaatgatagt |
6951768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31181659 - 31181808
Alignment:
| Q |
1 |
agcataatttcatctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattgatacttttgtatagagtttggaa |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| | |||||||||| |
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| T |
31181659 |
agcataatttcatctctagcatgatatgtgtatgtatgaattttgtggaaattttggagtcaatgacctttatattaatacttttgtcttgagtttggaa |
31181758 |
T |
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| Q |
101 |
gagtgatcaaaatatagacggtagatataattggtttgatttatcaaaat |
150 |
Q |
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| T |
31181759 |
tagtgatcagaatatagacatcagataaaattggtttggtttgtcaaaat |
31181808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 111179 - 111249
Alignment:
| Q |
80 |
acttttgtatagagtttggaagagtgatcaaaatatagacggtagatataattggtttgatttatcaaaat |
150 |
Q |
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| T |
111179 |
acttttgcatagagtttggaatagtgatcaaaatatagacggtagataaaattggtttggtttgtcaaaat |
111249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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