View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_31 (Length: 289)
Name: NF17445_low_31
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 39956844 - 39956573
Alignment:
| Q |
19 |
cttatacacccttttgtaagttctatacttcaatcataaacttcctcaagaacatttctctctctcggacacatttcattaagaactgcaaaaagagtct |
118 |
Q |
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| T |
39956844 |
cttatacacccttttgtaagttctatacttcaatcataaacttcctcaagaacatttctctctctcggacacatttcattaagaactgcaaaaagagtac |
39956745 |
T |
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| Q |
119 |
atcataaattaattaatttt-atctatcatcatttatggcttccctctggtcattctcatcaatattcctagccttaatagcatgcaattgttcattagc |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956744 |
atcataaattaattaatttttatctatcatcatttatggcttccttttggtcattctcatcaatattcctagccttaatagcatgcaattgttcattagc |
39956645 |
T |
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| Q |
218 |
tttggcttctgcaaaaaccatgcatatttcaacaatctcagcagcaccaactacattaccagaagctcctct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956644 |
tttggcttctgcaaaaaccatgcatatttcaacaatctcagcagcaccaactacattaccagaagctcctct |
39956573 |
T |
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