View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17445_low_32 (Length: 282)

Name: NF17445_low_32
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17445_low_32
NF17445_low_32
[»] chr6 (5 HSPs)
chr6 (85-273)||(23159242-23159430)
chr6 (82-207)||(20022800-20022928)
chr6 (211-273)||(20015318-20015380)
chr6 (1-51)||(23159647-23159697)
chr6 (1-50)||(20023140-20023189)
[»] scaffold0041 (1 HSPs)
scaffold0041 (152-215)||(31219-31281)
[»] chr8 (1 HSPs)
chr8 (152-215)||(22933191-22933253)
[»] chr3 (2 HSPs)
chr3 (152-223)||(7567946-7568016)
chr3 (169-214)||(41138388-41138433)
[»] chr7 (1 HSPs)
chr7 (169-214)||(3569639-3569684)
[»] chr5 (1 HSPs)
chr5 (169-214)||(38926577-38926622)
[»] chr1 (1 HSPs)
chr1 (169-214)||(46353005-46353050)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 23159430 - 23159242
Alignment:
Q  85 aaacactaatggttggatttacaatttgataaggctcatgtattatctcaagtattttgatccctaaaaaatatctcaagtattttgataaaagtcatgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  23159430 aaacactaatggttggatttacaatttgataaggctcatgtattatctcaagtattttgatccttaaaaaagatctcaagtattttgataaaagtcatgg 23159331  T
Q  185 ataagaggaaatctaggcaactcgaagcatacatacatacaatcatagtaattttattcttgctatatgggttgaagcatcagtataat 273  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23159330 ataagaggtaatctaggcaactcgaagcatacatacatacaatcatagtaattttattcttgctatatgggttgaagcattagtataat 23159242  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 20022928 - 20022800
Alignment:
Q  82 gaaaaacactaatggttggatttacaatttgat---aaggctcatgtattatctcaagtattttgatccctaaaaaatatctcaagtattttgataaaag 178  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  20022928 gaaaaacactaatggttggatttacaatttgatgataaggctcatgtattatctcaagtatttttatccctaaaagaaatctcaagtattttgataaaag 20022829  T
Q  179 tcatggataagaggaaatctaggcaactc 207  Q
    ||| | |||||||||||||||||||||||    
T  20022828 tcaagaataagaggaaatctaggcaactc 20022800  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 20015380 - 20015318
Alignment:
Q  211 gcatacatacatacaatcatagtaattttattcttgctatatgggttgaagcatcagtataat 273  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  20015380 gcatacatgcatacaatcatagtaattttcttctttctatatgggttgaagcatcagtataat 20015318  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23159697 - 23159647
Alignment:
Q  1 aagaatacctacattgcctatgcggctactccatcacatgccggtccttgg 51  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23159697 aagaataccttcattgcctatgcggctactccatcacatgccggtccttgg 23159647  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20023189 - 20023140
Alignment:
Q  1 aagaatacctacattgcctatgcggctactccatcacatgccggtccttg 50  Q
    |||||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  20023189 aagaataccttcattttctatgcggctactccatcacatgtcggtccttg 20023140  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 31281 - 31219
Alignment:
Q  152 aaaatatctcaagtattttgataaaagtcatggataagaggaaatctaggcaactcgaagcata 215  Q
    |||| ||||||||||||||||||||| || | ||||| ||| ||| ||||||||||||||||||    
T  31281 aaaaaatctcaagtattttgataaaactc-tagataaaagggaatataggcaactcgaagcata 31219  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 22933191 - 22933253
Alignment:
Q  152 aaaatatctcaagtattttgataaaagtcatggataagaggaaatctaggcaactcgaagcata 215  Q
    |||| ||||||||||||||||||||| || | ||||| ||| ||| ||||||||||||||||||    
T  22933191 aaaaaatctcaagtattttgataaaactc-tagataaaagggaatataggcaactcgaagcata 22933253  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 7567946 - 7568016
Alignment:
Q  152 aaaatatctcaagtattttgataaaagtcatggataagaggaaatctaggcaactcgaagcatacatacata 223  Q
    |||| ||||||||||||||||||||| |||| ||||| ||| ||| ||||||||  ||||||||||| ||||    
T  7567946 aaaaaatctcaagtattttgataaaactcatagataaaagg-aatataggcaacgtgaagcatacattcata 7568016  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 41138433 - 41138388
Alignment:
Q  169 ttgataaaagtcatggataagaggaaatctaggcaactcgaagcat 214  Q
    ||||||||| |||| ||||| ||||||| |||||||||||||||||    
T  41138433 ttgataaaactcatagataaaaggaaatataggcaactcgaagcat 41138388  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 3569684 - 3569639
Alignment:
Q  169 ttgataaaagtcatggataagaggaaatctaggcaactcgaagcat 214  Q
    ||||||||| |||| ||||| ||||||| |||||||||||||||||    
T  3569684 ttgataaaactcatagataaaaggaaatataggcaactcgaagcat 3569639  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 38926622 - 38926577
Alignment:
Q  169 ttgataaaagtcatggataagaggaaatctaggcaactcgaagcat 214  Q
    ||||||||| |||| ||||| ||||||| |||||||||||||||||    
T  38926622 ttgataaaactcatagataaaaggaaatataggcaactcgaagcat 38926577  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 46353050 - 46353005
Alignment:
Q  169 ttgataaaagtcatggataagaggaaatctaggcaactcgaagcat 214  Q
    ||||||||| |||| ||||| ||||||| |||||||||||||||||    
T  46353050 ttgataaaactcatagataaaaggaaatataggcaactcgaagcat 46353005  T

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