View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_33 (Length: 267)
Name: NF17445_low_33
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 46731175 - 46731418
Alignment:
| Q |
1 |
atgacactacaattacaaaaatgcaattccaatttccaactactaccattctaatttacctaggaaaacgcttggggtgcacatgcactcgcaaataagt |
100 |
Q |
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| T |
46731175 |
atgacactacaattacaaaaatgcaattccaatttccaa-----accattctaatttacctaggaaaacgcttggggtgcacatgcactcgcaaataagt |
46731269 |
T |
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| Q |
101 |
tcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctcttatagtttttcctttgagggaagctcttttttgcagaaccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46731270 |
tcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctcttatagtttttcctttgagggaagatcttttttgcagaaccaat |
46731369 |
T |
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| Q |
201 |
ggttcagttacttgttcgaaaattctaatttgctctgcagtagccgtag |
249 |
Q |
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| T |
46731370 |
ggttcagttacttgttcgaaaattctaatttgctctgcagtagccgtag |
46731418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 57 - 244
Target Start/End: Original strand, 7927670 - 7927857
Alignment:
| Q |
57 |
tacctaggaaaacgcttggggtgcacatgcactcgcaaataagttcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctc |
156 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| | |||||||||||||||| ||||| || ||||||| |
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| T |
7927670 |
tacctaggaaaacgcttagggtgcacgtgcactcgcaaatatgttcctggttcaacaaattgatccacatcagttacacggaacgttttctgtgcttctc |
7927769 |
T |
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| Q |
157 |
ttatagtttttcctttgagggaagctcttttttgcagaaccaatggttcagttacttgttcgaaaattctaatttgctctgcagtagc |
244 |
Q |
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| T |
7927770 |
ttatagtttttcctttgacagaagctctttttcgcacaaccagtggttcagttacttctttaaaaaccctaatttgctcttcagtagc |
7927857 |
T |
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