View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17445_low_37 (Length: 248)

Name: NF17445_low_37
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17445_low_37
NF17445_low_37
[»] scaffold0218 (2 HSPs)
scaffold0218 (150-248)||(14378-14477)
scaffold0218 (9-86)||(14237-14314)
[»] scaffold0091 (3 HSPs)
scaffold0091 (150-248)||(29058-29157)
scaffold0091 (9-86)||(28917-28994)
scaffold0091 (9-71)||(24720-24782)
[»] chr6 (4 HSPs)
chr6 (150-248)||(14989390-14989489)
chr6 (151-248)||(14980278-14980376)
chr6 (9-73)||(14980458-14980522)
chr6 (150-186)||(10906902-10906938)
[»] chr3 (9 HSPs)
chr3 (152-248)||(16642300-16642397)
chr3 (151-248)||(4712815-4712913)
chr3 (150-245)||(14062796-14062892)
chr3 (150-242)||(14055058-14055151)
chr3 (153-248)||(13926863-13926960)
chr3 (9-73)||(16642133-16642197)
chr3 (9-73)||(4712995-4713059)
chr3 (9-73)||(14062981-14063045)
chr3 (9-72)||(14055221-14055284)
[»] chr1 (5 HSPs)
chr1 (150-248)||(13882251-13882350)
chr1 (150-248)||(51658677-51658776)
chr1 (9-73)||(13882462-13882526)
chr1 (12-70)||(51658854-51658912)
chr1 (164-238)||(1567090-1567166)
[»] chr7 (8 HSPs)
chr7 (150-248)||(48376788-48376887)
chr7 (150-248)||(16060513-16060612)
chr7 (9-86)||(16060374-16060449)
chr7 (150-248)||(4531764-4531864)
chr7 (9-72)||(9080206-9080269)
chr7 (9-61)||(16069015-16069067)
chr7 (9-61)||(48376637-48376689)
chr7 (150-186)||(9080339-9080375)
[»] scaffold0003 (2 HSPs)
scaffold0003 (150-223)||(130796-130870)
scaffold0003 (9-73)||(130633-130697)
[»] chr8 (7 HSPs)
chr8 (150-248)||(23658527-23658634)
chr8 (150-211)||(23657752-23657814)
chr8 (9-60)||(23657648-23657699)
chr8 (206-248)||(23657827-23657869)
chr8 (9-60)||(23658423-23658474)
chr8 (9-61)||(17862251-17862303)
chr8 (218-248)||(29293929-29293959)
[»] scaffold1269 (1 HSPs)
scaffold1269 (172-245)||(1-75)
[»] scaffold0063 (2 HSPs)
scaffold0063 (9-86)||(28443-28518)
scaffold0063 (150-187)||(28342-28379)
[»] chr2 (2 HSPs)
chr2 (150-248)||(23656475-23656575)
chr2 (10-61)||(23907788-23907839)
[»] scaffold0319 (1 HSPs)
scaffold0319 (195-248)||(13585-13638)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-73)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (9-61)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (9-61)||(25756788-25756840)
chr5 (9-61)||(25790961-25791013)
chr5 (12-56)||(24832209-24832253)
[»] chr4 (2 HSPs)
chr4 (170-239)||(3576240-3576311)
chr4 (9-56)||(19728457-19728504)


Alignment Details
Target: scaffold0218 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 14378 - 14477
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 14237 - 14314
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| ||||||  |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||  |||||||||||    
T  14237 gacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacacaccaccc 14314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 29058 - 29157
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29058 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 28917 - 28994
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

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Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 24720 - 24782
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatat 71  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 14989489 - 14989390
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14989489 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14989390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 14980376 - 14980278
Alignment:
Q  151 catcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattc 14980278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 14980522 - 14980458
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 14980458  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 10906938 - 10906902
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcat 186  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10906938 tcatcatcactaaaatataaacattatcatttctcat 10906902  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 16642300 - 16642397
Alignment:
Q  152 atcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 16642397  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 4712913 - 4712815
Alignment:
Q  151 catcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattc 4712815  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 14062892 - 14062796
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgga 245  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  14062892 tcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatgga 14062796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 14055151 - 14055058
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatcactcttcgtcacattat 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||    
T  14055151 tcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattat 14055058  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 13926960 - 13926863
Alignment:
Q  153 tcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||  | ||||||||||||| |||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattc 13926863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 16642133 - 16642197
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 16642197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 4713059 - 4712995
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatatat 4712995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 14063045 - 14062981
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatatat 14062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 14055284 - 14055221
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 72  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatata 14055221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 13882350 - 13882251
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  13882350 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggattc 13882251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 51658776 - 51658677
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51658776 tcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 51658677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 13882526 - 13882462
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||  ||| |||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatatat 13882462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 51658912 - 51658854
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtata 70  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  51658912 atcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 1567166 - 1567090
Alignment:
Q  164 atataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc-ttcgtcatcactcttcgtcaca 238  Q
    ||||||| ||| ||||||||||||||||||| ||  |||||| |||||||||||  |||||||||||||| ||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcaca 1567090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 48376788 - 48376887
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  48376788 tcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagattc 48376887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 16060513 - 16060612
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| || ||||||||| |||||    
T  16060513 tcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagattc 16060612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 16060374 - 16060449
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 4531864 - 4531764
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttattaatt-acatgtatataatatct-tcgtcatcactcttcgtcacattatggatt 247  Q
    ||||||||| ||| |||||| |||||| ||||||||| ||||||||| ||| |||| |||||||||||  | ||||||||||||||||||||||||||||    
T  4531864 tcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggatt 4531765  T
Q  248 c 248  Q
    |    
T  4531764 c 4531764  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 9080206 - 9080269
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 72  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatata 9080269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16069067 - 16069015
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtca 16069015  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 48376637 - 48376689
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    |||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48376637 gacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtca 48376689  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 9080339 - 9080375
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcat 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  9080339 tcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: scaffold0003 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 130796 - 130870
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  130796 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 130633 - 130697
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 130697  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 23658527 - 23658634
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattac--------atgtatataatatcttcgtcatcactcttcgtcacatt 240  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||        || |||||||||||||||||||||||||||||||||||    
T  23658527 tcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacatt 23658626  T
Q  241 atggattc 248  Q
    ||||||||    
T  23658627 atggattc 23658634  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 23657752 - 23657814
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatata 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  23657752 tcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 23657648 - 23657699
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtc 60  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtc 23657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 23657827 - 23657869
Alignment:
Q  206 tatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23657827 tatataatatcttcgtcatcactcttcgtcacattatggattc 23657869  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 23658423 - 23658474
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtc 60  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23658423 gacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtc 23658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17862303 - 17862251
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| ||||    
T  17862303 gacatcatcattcaaatcatcatcataattataccttatcattctcatcgtca 17862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 29293929 - 29293959
Alignment:
Q  218 tcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||||||||||||||||||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattc 29293959  T

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Target: scaffold1269 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 1 - 75
Alignment:
Q  172 attatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgga 245  Q
    ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatgga 75  T

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Target: scaffold0063 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 28518 - 28443
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  28518 gacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 28379 - 28342
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatc 187  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28379 tcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 23656575 - 23656475
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttattaa-ttacatgtatataatatct-tcgtcatcactcttcgtcacattatggatt 247  Q
    |||| |||| ||| ||||||| ||||||||||||||| ||||||||| | || ||| |||||||||||  ||||||||||||||||||||||||||||||    
T  23656575 tcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggatt 23656476  T
Q  248 c 248  Q
    |    
T  23656475 c 23656475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 23907788 - 23907839
Alignment:
Q  10 acatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||| ||||    
T  23907788 acatcatcattcaaattatcatcataaatatacgtcatcattctcatcgtca 23907839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 13638 - 13585
Alignment:
Q  195 ttaattacatgtatataatatcttcgtcatcactcttcgtcacattatggattc 248  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  13638 ttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattc 13585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18156 - 18097
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||| ||| |||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatatat 18097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 1484 - 1432
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||| ||||    
T  1484 gacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtca 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 25756840 - 25756788
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25756840 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25756788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 25790961 - 25791013
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25790961 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25791013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24832253 - 24832209
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcttcattctcat 56  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  24832253 atcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  170 acattatcatttctcatcgtatttattaat-tacatgtatataatatct-tcgtcatcactcttcgtcacat 239  Q
    |||| ||||| |||||||||||||||| || ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 19728504 - 19728457
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcat 56  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||||||    
T  19728504 gacatcatcattcaaatcatcatcataattatactttatcattctcat 19728457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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