View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_39 (Length: 242)
Name: NF17445_low_39
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 30147071 - 30147222
Alignment:
| Q |
74 |
ccaataccactatagattccaatggtgcatttggctatcagccaaatttagtggcaaggcaattcggtttaatccaaacccgtcccggctcatttttcaa |
173 |
Q |
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| T |
30147071 |
ccaataccactatagattccaatggtacatttggctatcagccaaatttagtggcaaggcaattcggtttaatccaaacccatcccggctcatttttcaa |
30147170 |
T |
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| Q |
174 |
agctaagagagacataaagagaccaaagcccgaacaaagatgggggacatat |
225 |
Q |
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| T |
30147171 |
agctaagagagacataaagagaccaaagcccgaacaacgatgggggacatat |
30147222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 30055865 - 30055923
Alignment:
| Q |
11 |
agaagaaaccaatgtcgtttggaaagcttatttgactcctactctcctctcgtaggaca |
69 |
Q |
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| T |
30055865 |
agaagaaaccaatgtcgtttggaaagcttatttgactcctactctcctctcgtaggaca |
30055923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 30146908 - 30146966
Alignment:
| Q |
11 |
agaagaaaccaatgtcgtttggaaagcttatttgactcctactctcctctcgtaggaca |
69 |
Q |
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| T |
30146908 |
agaagaaaccaatgtcgtttggaaagcttatttgactcctactctcctctcgtaggaca |
30146966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 20180521 - 20180624
Alignment:
| Q |
76 |
aataccactatagattccaatggtgcatttggctatcagccaaatttagtggcaaggcaattcggtttaatccaaacccgtcccggctcatttttcaaag |
175 |
Q |
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| T |
20180521 |
aataccactttagattcttatggtgtatttggctatctgccaaatttagtggcgaggcaattttatttgatccaaactcgtcctagttcatttttcaaaa |
20180620 |
T |
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| Q |
176 |
ctaa |
179 |
Q |
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|||| |
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| T |
20180621 |
ctaa |
20180624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 22155470 - 22155367
Alignment:
| Q |
76 |
aataccactatagattccaatggtgcatttggctatcagccaaatttagtggcaaggcaattcggtttaatccaaacccgtcccggctcatttttcaaag |
175 |
Q |
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| T |
22155470 |
aataccactttagattcttatggtgtatttggctatctgccaaatttagtggcgaggcaattttatttgatccaaactcgtcctagttcatttttcaaaa |
22155371 |
T |
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| Q |
176 |
ctaa |
179 |
Q |
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|||| |
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| T |
22155370 |
ctaa |
22155367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 11062772 - 11062688
Alignment:
| Q |
95 |
atggtgcatttggctatcagccaaatttagtggcaaggcaattcggtttaatccaaacccgtcccggctcatttttcaaagctaa |
179 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||| ||||| |||| ||| ||| | | |||||||||||| |||| |
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| T |
11062772 |
atggtgtatttggctatcagccaaatttagtggcgaggcaatttggtttgatccgaactcgttctagttcatttttcaaaactaa |
11062688 |
T |
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