View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_4 (Length: 569)
Name: NF17445_low_4
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 52822096 - 52822641
Alignment:
| Q |
16 |
cactatcaagctgacacaagctatctcttattctctctttcaatatggctctccttttcaagtttctctatctcctagcaaaggattctctttgctaatt |
115 |
Q |
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| T |
52822096 |
cactatcaagctgacacaagctatctcttattctctctttcaatatggctctccttttcaagtttctctatctcctagcaaaggattctctttgccaatt |
52822195 |
T |
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| Q |
116 |
caaaaattccatcacttctctcaagag--atagtactagctagattctatacttacacttttttgccttctcgatctcatcatctagagaatgaatgcac |
213 |
Q |
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| T |
52822196 |
caaaaattccatcacttctctcaagagagatagtactagctagattctatacttacacttttttgccttctcgatctcatcatctagagaatgaatgcac |
52822295 |
T |
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| Q |
214 |
attcttgagtgcttaattcaattaaatatgcataatatatatcattatgtctaccacttttatatttgcatggaaattttaagtatttgattagctagag |
313 |
Q |
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| T |
52822296 |
attcttgagtgcttaattcaattaaatatgcataatatatatcattatgtctaccacttttatatttgcatggaaattttaagtatttgattagctagag |
52822395 |
T |
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| Q |
314 |
gatgagtaatccttttatgtcattataattaattattttgaagctttttatacctttaataaaaagactccacttccactcttagtgtcattattgcagc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52822396 |
gatgagtaatccttttatgtcattataattaattattttgaagctttttatacctttaataaaaagactccacttccactcttagtgtcattattgcagc |
52822495 |
T |
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| Q |
414 |
tgagttggtggggatgcataggttgcttttatatcaatttggttatgcttttttggtaggaatatgtctctttgcttgagcttctgaatttcctctttca |
513 |
Q |
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| T |
52822496 |
tgagttggtggggatgcataggttgcttttatatcaatttggttatgcttttttggtaggaatatatctctttgcttgagcttctgaatttcctctttca |
52822595 |
T |
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| Q |
514 |
tagtaattctttattcttattagtgccaactctttataaccctttg |
559 |
Q |
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| T |
52822596 |
tattaattctttattcttattagtgccaactctttataacactttg |
52822641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 16565166 - 16565233
Alignment:
| Q |
375 |
aaaagactccacttccactcttagtgtcattattgcagctgagttggtggggatgcataggttgcttt |
442 |
Q |
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||||||||||| ||||||||| |||| ||| ||||||| || |||||||| |||||| ||||||||| |
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| T |
16565166 |
aaaagactccatttccactctcagtgccatcattgcagttgcattggtgggcatgcatgggttgcttt |
16565233 |
T |
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