View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_48 (Length: 202)
Name: NF17445_low_48
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 47308698 - 47308872
Alignment:
| Q |
6 |
gtcgaagaaaattctcaaatgatgcgtagcaatatgtttggcaaaaaggtgcttgataagtttgagggtaaaaatcggcgtaataatatataaacatgta |
105 |
Q |
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| T |
47308698 |
gtcgaagcaaattctcaaatgatgcgtagcaatatgtttggcaaaaaggtgcttgataagtttgagggtaaaaatcggcgtaataatatataaacatgta |
47308797 |
T |
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| Q |
106 |
tttcatacctgctaggagtaacccttttaaaattagtgtgttaagctatgtgtgttagttgtttattagttatcc |
180 |
Q |
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| T |
47308798 |
tttcatacctgctaggagtaacccttttaaaattagtgtgttaagctatgtgtgttagttgtttattagttatcc |
47308872 |
T |
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