View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_6 (Length: 472)
Name: NF17445_low_6
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 140 - 464
Target Start/End: Original strand, 28250212 - 28250536
Alignment:
| Q |
140 |
attttattactgaatgttggaatatgagagttacagggtggtttatgcatgatttaattactaagttgaagcttttgnnnnnnncgttgaaagtgtggaa |
239 |
Q |
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| T |
28250212 |
attttattactgaatgttggaatatgagagttacagggtgccttatgtttgatttaattattaagttgaagcttttaaaaaataagttgaaagtgtggaa |
28250311 |
T |
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| Q |
240 |
taaagaagtttctggaattgtccactcctatgacaattatgctaagaataatttgagtgaaattcaaaatcaaattaaattgggaggtcatacttattat |
339 |
Q |
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| T |
28250312 |
taaagaagtttctggaattgtccactcctatgacaattatgctaagaataatttgagtgaaattcaaaatcaaattaaattgggaggtcatacttattat |
28250411 |
T |
|
| Q |
340 |
cttatgattgatgaaaagaaagctcatatgattttagacgaagccctacatagacaagaggtttcccggaaggaaaaagttacgattagctgacatgtga |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
28250412 |
cttatgattgatgaaaagaaagctcatatgattttagacgaagccctacatagacaagaggttttccggaaggaaaaagttaggattagctaacatgtga |
28250511 |
T |
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| Q |
440 |
atggtgataaaaattccatattctt |
464 |
Q |
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| T |
28250512 |
acggtgataaaaattccatattctt |
28250536 |
T |
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