View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17445_low_7 (Length: 419)
Name: NF17445_low_7
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17445_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 34505231 - 34504841
Alignment:
| Q |
19 |
agaaaaccgttggagacagcgtgtaattgcttgacacgtaaggtcaaatgagtcaaataggtgtttcttggacatacacgtgtgttactagaaggaaaga |
118 |
Q |
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| T |
34505231 |
agaaaaccgttggagacagcgtgtaattgcttgacacgtaaggtcaaatgagtcaaataggtgtttcatggacatacacgtgtgttactagaaggaaaga |
34505132 |
T |
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| Q |
119 |
ttagtgttatagctgtcgtcgttgcatttgttctcacgcgcttgtttcgacagtgagttgtacttggatacttactgtaagtgaaaaactcattttaata |
218 |
Q |
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| T |
34505131 |
ttagtgttatagctgtcgtagttgcatttgttctcacgcgcttgtttcgacagtgagttgtacttggatacttactgtaagtgaaaaactcattttaata |
34505032 |
T |
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| Q |
219 |
aatgaaacgaataagttcccttgaaggaaacc----gaaagaagattctaagcattgaaaggttcttggtgaagaatgctcattgaatgcttgaagattt |
314 |
Q |
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| T |
34505031 |
aatgaaacgaataggttcccttgaaggaaaccgaaggaaggaagattcaaagcattgaaaggttcttggtgaagaatgctcattgaatgcttgaagattt |
34504932 |
T |
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| Q |
315 |
gaagaccttggtgatccaatttcaagaagagtttgaagtttgggtatcttggatttttgaaaaggattcaattcaaggctttagatctagtataat |
410 |
Q |
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| T |
34504931 |
gaagaccttggtgatccaatttcaagaagagtttgaagtttgggtatcttggatttttgaaaagg-----attcaaggctttagatctagtataat |
34504841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 21610214 - 21610175
Alignment:
| Q |
267 |
cattgaaaggttcttggtgaagaatgctcattgaatgctt |
306 |
Q |
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| T |
21610214 |
cattgaaaagttcttggtgaagaatgctcatggaatgctt |
21610175 |
T |
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