View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17445_low_9 (Length: 409)

Name: NF17445_low_9
Description: NF17445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17445_low_9
NF17445_low_9
[»] chr2 (10 HSPs)
chr2 (189-409)||(31381185-31381405)
chr2 (234-409)||(31277861-31278036)
chr2 (231-405)||(31370558-31370732)
chr2 (193-405)||(31287321-31287536)
chr2 (228-405)||(31301942-31302119)
chr2 (212-405)||(31250455-31250648)
chr2 (246-405)||(31312453-31312612)
chr2 (219-402)||(31241544-31241727)
chr2 (233-405)||(31352456-31352628)
chr2 (7-101)||(31370335-31370429)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 189 - 409
Target Start/End: Original strand, 31381185 - 31381405
Alignment:
Q  189 catcaattgataaactctgactctgtgatctacttaccttattttcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattac 288  Q
    ||||| ||||||||||| |||| |||||  ||| ||||||||||| |||||||||||||||||| |||||||||||||| |  |||||||||||||||||    
T  31381185 catcacttgataaactccgactttgtgacttacataccttatttttttccatttgagagtaatactgcctcattacttcaagtttctgttcatccattac 31381284  T
Q  289 ttcacttgaatctgaaacaaattctggaaccacagtctttccttcaagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcg 388  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||  ||||||||||| ||||||||||||| |    
T  31381285 ttcacttgaatctgaaacaaattctggaaccacagtccttccttcaagcatacttaccactgatgacatagacggcctaaggtttgaagtgtcattggtg 31381384  T
Q  389 cataggagagccacatttatc 409  Q
    |||||||||||||||||||||    
T  31381385 cataggagagccacatttatc 31381405  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 31277861 - 31278036
Alignment:
Q  234 cttccatttgagagtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaattctggaaccacagtctttccttc 333  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  31277861 cttccattttagagtaatactgcctcattatttccaacttctgttcatccatcacttctcttgaatatgaaacaaattctggaaccacagtcattccttc 31277960  T
Q  334 aagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccacatttatc 409  Q
    ||||||||||||||| || |||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  31277961 aagcatacttaccactgaagacatagacggcctaaggtttgaagtgtcattggcgcataggagagcgacatttatc 31278036  T

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Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 231 - 405
Target Start/End: Original strand, 31370558 - 31370732
Alignment:
Q  231 tttcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaattctggaaccacagtctttcc 330  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  31370558 tttcttccatctgagagtaatactgcctcattacttccaacttctgtttatccattacttcatttgaatctgaaacaaattctggaacaacagtccttcc 31370657  T
Q  331 ttcaagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccacatt 405  Q
    ||||||||||||||| ||||||||||| | |||||||||||| |||||| ||||||  |||||||||||||||||    
T  31370658 ttcaagcatacttacaacggacgacattgaaggcctaaggtttgaagtgacattggtacataggagagccacatt 31370732  T

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Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 193 - 405
Target Start/End: Original strand, 31287321 - 31287536
Alignment:
Q  193 aattgataaactctgactctgtgatctacttacctta---ttttcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattact 289  Q
    ||||||||||||| |||| |||||  ||||||||||    ||||| || |||||||||||||| || |||||| ||| |||||||| ||||||||| |||    
T  31287321 aattgataaactccgactttgtgacttacttaccttgctgttttcatctatttgagagtaatactgactcatttcttgcaacttcttttcatccatcact 31287420  T
Q  290 tcacttgaatctgaaacaaattctggaaccacagtctttccttcaagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgc 389  Q
    ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||  ||||||||||| ||||||||||||| ||    
T  31287421 tcatttgattctgaaacaaattctggaaccacagtccttccttcaagcatacttaccactgaagacataggcggcctaaggtttgaagtgtcattggtgc 31287520  T
Q  390 ataggagagccacatt 405  Q
    |||||||| |||||||    
T  31287521 ataggagacccacatt 31287536  T

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Target: chr2; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 228 - 405
Target Start/End: Original strand, 31301942 - 31302119
Alignment:
Q  228 tattttcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaattctggaaccacagtctt 327  Q
    ||||||||||||| ||| ||||||| ||||||| ||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  31301942 tattttcttccatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctgacacaaattctggaaccacagtcct 31302041  T
Q  328 tccttcaagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccacatt 405  Q
    |||||||||||||||||| || || |||||||  ||||||||||| |||||| | |||| ||||||||||||||||||    
T  31302042 tccttcaagcatacttacgactgaggacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacatt 31302119  T

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Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 212 - 405
Target Start/End: Original strand, 31250455 - 31250648
Alignment:
Q  212 tgtgatctacttaccttattttcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaatt 311  Q
    |||||| |||||  |||||||||||| || ||| ||||||| || |||||| |||||||||| |  ||||||||||||||||||||||||||||||||||    
T  31250455 tgtgatttacttgtcttattttcttcaatctgatagtaatactgtctcattgcttccaactttttctcatccattacttcacttgaatctgaaacaaatt 31250554  T
Q  312 ctggaaccacagtctttccttcaagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccacatt 405  Q
    |||||||||| || |||||||||||||||||||||||||||||||| |  ||||||||||| ||||||   |||| |||||||||||| |||||    
T  31250555 ctggaaccacggtatttccttcaagcatacttaccacggacgacatcgatggcctaaggtttgaagtgaggttggtgcataggagagcaacatt 31250648  T

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Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 31312453 - 31312612
Alignment:
Q  246 agtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaattctggaaccacagtctttccttcaagcatacttac 345  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||  |||||||||||||||||| |  |||||||||||||||||||    
T  31312453 agtaatactgcctcattactttcatcttcttttcatccattacttcacttgaatctggcacaaattctggaaccacatttcttccttcaagcatacttac 31312552  T
Q  346 cacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccacatt 405  Q
    ||||||||||||||  | ||||| ||| |||||| | |||| ||||||||||||||||||    
T  31312553 cacggacgacatagatgtcctaaagtttgaagtgacgttggtgcataggagagccacatt 31312612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 402
Target Start/End: Original strand, 31241544 - 31241727
Alignment:
Q  219 tacttaccttattttcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaattctggaac 318  Q
    |||||| |||||||||||| || ||| | ||||| |  |||||| |||||||||| |  |||||||||||||||||||||||||||||||||||||||||    
T  31241544 tacttatcttattttcttcaatctgataataatactttctcattgcttccaactttttctcatccattacttcacttgaatctgaaacaaattctggaac 31241643  T
Q  319 cacagtctttccttcaagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccac 402  Q
    ||| || |||||||||||||||||||| || |||||||| |  ||||||||||| |||||| | ||||  ||||||||||||||    
T  31241644 cacggtatttccttcaagcatacttacaaccgacgacatggggggcctaaggtttgaagtgacgttggtacataggagagccac 31241727  T

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Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 233 - 405
Target Start/End: Original strand, 31352456 - 31352628
Alignment:
Q  233 tcttccatttgagagtaatattgcctcattacttccaacttctgttcatccattacttcacttgaatctgaaacaaattctggaaccacagtctttcctt 332  Q
    ||||| || ||| ||||||| || |||||| |||||| ||| |   |||||||||||| |||||||||||  ||||||||||||||||| ||  ||||||    
T  31352456 tcttcgatctgatagtaatactgtctcatttcttccatcttattgccatccattactttacttgaatctggcacaaattctggaaccacggttcttcctt 31352555  T
Q  333 caagcatacttaccacggacgacatagcaggcctaaggttcgaagtgtcattggcgcataggagagccacatt 405  Q
    ||||||||||||| || ||||||||||  ||||||||||| |||||| |||||| ||||||||||||||||||    
T  31352556 caagcatacttacaactgacgacatagagggcctaaggtttgaagtgacattggtgcataggagagccacatt 31352628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 31370335 - 31370429
Alignment:
Q  7 aagcaaaggtaaattaatatactcgcaaatatttgccttgttactttcaattcagtttccttatttattcaaaaattgcctaaaaacataactgt 101  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31370335 aagcaaagggaaatttatatactcgcaaataattgccttgttactttccattcagtttccctatttattcaaaaattgcctaaaaacataactgt 31370429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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