View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_11 (Length: 380)
Name: NF17446_high_11
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 3332804 - 3332658
Alignment:
| Q |
21 |
tgcaaaggaattaagtatatttgaagaaagaatactcatctcagcagcacatatcgattatagagattaattatggatcaaataacatcacatggacatt |
120 |
Q |
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| T |
3332804 |
tgcaaaggaattaagtatatttgaagaaagaatactcatctcagcagcacatatcgattatagagattaattatggatcaaataacatcacatggacatt |
3332705 |
T |
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| Q |
121 |
cacttcctccacctttccacacagcaagagatcttcatcttcaccat |
167 |
Q |
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| T |
3332704 |
cacttcctccacctttccacacagcaagagatcttcatcttcaccat |
3332658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 234 - 363
Target Start/End: Complemental strand, 3332591 - 3332462
Alignment:
| Q |
234 |
accacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgagaagaaaacagcaacaacaagttcagcacagatttta |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332591 |
accacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgagaagaaaacagcaacaacaagttcagcacagatttta |
3332492 |
T |
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| Q |
334 |
gccccaagttagaatccggaggaggtggtt |
363 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3332491 |
gccccaagttagaatccggaggaggtggtt |
3332462 |
T |
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