View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_13 (Length: 377)
Name: NF17446_high_13
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 3377163 - 3376814
Alignment:
| Q |
10 |
aagaatattcatgatattacctctccagaattaactgtgataatgcggggtgtaaaagtagtgccttctgacaccttatgctctagttcttgagagtgtt |
109 |
Q |
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| T |
3377163 |
aagaatatttataatattacctctccagaattaactgtgataatgcggggtgtaaaagtagtgccttctgacaccttatgctctcgttcttgagagtgtt |
3377064 |
T |
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| Q |
110 |
gagtttgatcttcaatagctccctcatgaggatctaaatttactatagcaccaactgaatttgcaagaaattggccagacaaaagnnnnnnngaactttc |
209 |
Q |
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| T |
3377063 |
gcgttttatcttcaatagcttcctcatgaggatctaaatttactatagcaccaactgaatttgcaagaaattggccagacaaaataaagaaagaactttc |
3376964 |
T |
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| Q |
210 |
actaaataatcatacttattaaccatgaagatattcaatgccgaaatcaggaaattatgaacagacacagtttatatctaaagaatagaatcaatatgta |
309 |
Q |
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| T |
3376963 |
actaaataatcatacttattaaccatgaagatattcaatgtcaaaatcaggtaattatgaacagacacagtttctatctaaagaatagaatcaatatgta |
3376864 |
T |
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| Q |
310 |
tgaaagctgaaccaacatttacaatttcgtcttatatttgatgcaagtac |
359 |
Q |
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| T |
3376863 |
tgaaagctgaaccaacatttacaatttcgtcttatatttgatgcaagtac |
3376814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 3372255 - 3372190
Alignment:
| Q |
58 |
ggtgtaaaagtagtgccttctgacaccttatgctctagttcttgagagtgttgagtttgatcttca |
123 |
Q |
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| T |
3372255 |
ggtgtaaaagcagtggcattcgacacctgatgctctacttcttgagggtgttgagtttgatcttca |
3372190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 3372158 - 3372106
Alignment:
| Q |
131 |
cctcatgaggatctaaatttactatagcaccaactgaatttgcaagaaattgg |
183 |
Q |
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|||||| |||||| ||||||| ||||||||||||||| ||||||| |||||| |
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| T |
3372158 |
cctcatcaggatccaaatttattatagcaccaactgagcttgcaagcaattgg |
3372106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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