View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_20 (Length: 277)
Name: NF17446_high_20
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 51826990 - 51827157
Alignment:
| Q |
11 |
gagatgaagctgaaaaggaaaccgtgcagaaagaatgaaaaataatgag---tataaaaaattgaggcagattggcctattgtcacggtaagatagatca |
107 |
Q |
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| T |
51826990 |
gagatgaagttgaaaaggaaaccgtgcagaaagaatgaaaaataatgaggagtataaaaaattgaggcagattggcctattgtcacggtaagatagatta |
51827089 |
T |
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| Q |
108 |
ctcaaggaaaaaacgctattgtgaatacaatttatgattagagatcaaattcatacttatggaaatag |
175 |
Q |
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| T |
51827090 |
ctcaaggaaaaaacgctattgtgaatacaatttatgattagagatcaaattcatactaatggaaatag |
51827157 |
T |
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