View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_25 (Length: 250)
Name: NF17446_high_25
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31456367 - 31456608
Alignment:
| Q |
1 |
cgattagtataattcatttctaaaaccagtaattctcgttgtttacggtcatttctgaatcttctgcaggaatcagtaacaataagagtggttttgatag |
100 |
Q |
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| T |
31456367 |
cgattagtataattcatttttaaaaccagtcattttcgttgtttacgatcatttctgaatcctctgtaggaatcagtaacaataagagtggttttgatag |
31456466 |
T |
|
| Q |
101 |
ccttgttgaggcagctaccgtggcttcacagaaatttaatactactcaacagcaaggaattattctagatgcacttgatagagcttttccaaaaccaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31456467 |
ccttgttgaggcagctaccgtggcttcacagaaatttaatactactcaacagcaaggaattattctagatgcacttgatagagcttttccaaagccaata |
31456566 |
T |
|
| Q |
201 |
ctttcagtggtgagttcattacaattttgtgtcatattcttc |
242 |
Q |
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| T |
31456567 |
ctttcagtggtgagttcattacaattttgtgtcatattcttc |
31456608 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 38465326 - 38465235
Alignment:
| Q |
65 |
tgcaggaatcagtaacaataagagtggttttgatagccttgttgaggcagctaccgtggcttcacagaaatttaatactactcaacagcaag |
156 |
Q |
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||||||| |||| |||||||||||||| | ||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| |||| |
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| T |
38465326 |
tgcaggactcagaaacaataagagtggctatgagagccttgttgaggcagctactatggcaaaacagaaatttaatgctattcaacaacaag |
38465235 |
T |
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