View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_29 (Length: 243)
Name: NF17446_high_29
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37641153 - 37640928
Alignment:
| Q |
1 |
ccacggagcaactctgttaccgattgcaagatataactccttcttccaaattgcagtcacggcaacggtggcggatacgacgagggaagagagaagggcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37641153 |
ccacggagcaactctgttaccgattgcaagatataaccccttcttccaaattgcagtcacggcaacggcggcggatacgacgagggaagagagaagggcg |
37641054 |
T |
|
| Q |
101 |
gagagttcgaggaaggaaaggaaggaatcgaaatttgaatcgacgacggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37641053 |
gagagttcgaggaaggaaaggaaggaatcgaaatttgaatcgacgacggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagtga |
37640954 |
T |
|
| Q |
201 |
aacggtggggtgtggaaagtggtttg |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37640953 |
aacggtggggtgtggaaagtggtttg |
37640928 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 2408708 - 2408657
Alignment:
| Q |
147 |
cggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagt |
198 |
Q |
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| T |
2408708 |
cggaaatttgagatcggcggcggaaggaattggtgtggacggtttaggaagt |
2408657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 33142465 - 33142516
Alignment:
| Q |
147 |
cggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagt |
198 |
Q |
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| T |
33142465 |
cggaaatttgagatcggcggcggaaggaattggtgtggacggtttaggaagt |
33142516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 16315005 - 16315056
Alignment:
| Q |
147 |
cggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagt |
198 |
Q |
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|||||| ||||||||||||| ||||||| |||||||||||||| |||||||| |
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| T |
16315005 |
cggaaatttgagatcggcggcggaaggaattggtgtggacggtttaggaagt |
16315056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 42900585 - 42900650
Alignment:
| Q |
147 |
cggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagtgaaacggtggggtg |
212 |
Q |
| |
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| T |
42900585 |
cggaaatttgagatcggctgcggaaggaattggtgtggacggtttgggaagtaaagctgtggggtg |
42900650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 33040152 - 33040101
Alignment:
| Q |
147 |
cggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagt |
198 |
Q |
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|||||| ||||||||||||| ||||||| |||||||||||||| |||||||| |
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|
| T |
33040152 |
cggaaatttgagatcggcggcggaaggaattggtgtggacggtttaggaagt |
33040101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 49882383 - 49882332
Alignment:
| Q |
147 |
cggaaagttgagatcggcgggggaaggagttggtgtggacggtgtaggaagt |
198 |
Q |
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|||||| ||||||||||||| ||||||| |||||||||| ||| |||||||| |
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| T |
49882383 |
cggaaatttgagatcggcggcggaaggaattggtgtggatggtttaggaagt |
49882332 |
T |
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